View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_low_82 (Length: 266)
Name: NF1254_low_82
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_low_82 |
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Alignment Details
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 34094799 - 34094887
Alignment:
| Q |
16 |
atatagtcctacaaaataaaccaaaatgcaaatcttaaaattaaggattagcaacaagagagagtgtgtccacatgtgataaataaaattat |
107 |
Q |
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| T |
34094799 |
atatagtcctacaaaataaaccaaaatgcaaatcttaaaattaaggat---aaacaagagagagtgtgtccacatgtgataaataaaattat |
34094887 |
T |
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Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 203 - 266
Target Start/End: Original strand, 34094983 - 34095046
Alignment:
| Q |
203 |
gggttcccaaaacaataagaccccccaaaagcattacacacatataccaaaatgtcctttcacc |
266 |
Q |
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| T |
34094983 |
gggtccccaaaacaataagaccctccaaaagcattacacacatataccaaaatgtcctttcacc |
34095046 |
T |
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