View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1254_low_86 (Length: 262)
Name: NF1254_low_86
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_low_86 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 160 - 262
Target Start/End: Original strand, 24517551 - 24517653
Alignment:
| Q |
160 |
tacacgtaccaattgaagtgcttaaaccaccaatggatgaaagggcgatacccagcaagaattgagaatccatgaggatgagaatgcaagggaaaaatcg |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24517551 |
tacacgtaccaattgaagtgcttaaaccaccaatggatgaaagggcgatacccagcaagaattgagaatccatgaggatgagaatgcaagggaaaaatcg |
24517650 |
T |
|
| Q |
260 |
aaa |
262 |
Q |
| |
|
||| |
|
|
| T |
24517651 |
aaa |
24517653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 24517043 - 24517136
Alignment:
| Q |
30 |
ccttcctcattttttaacggttagatttctccaaatctacttcccttctcaacatgtcatttcccctattacattttactgtatatgcttgtta |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24517043 |
ccttcctcattttttaacggttagatttctccaaatctacttcccttttcaacatgtcatttcccctattacattttactgtatatgcttgtta |
24517136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University