View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_low_88 (Length: 253)
Name: NF1254_low_88
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_low_88 |
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Alignment Details
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 29998443 - 29998294
Alignment:
| Q |
11 |
aaaagaaaagtttgagattcctcttccattttaagattttttgattgtgtacaatggattacgtagttgagtgtgtatttatatttctttnnnnnnnnnn |
110 |
Q |
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| T |
29998443 |
aaaagaaaagtttgagattcctcttccattttaagattttttgattgtgtacaatggattacgtagttgagtgtgtatttatatttctttaaaaaaaaaa |
29998344 |
T |
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| Q |
111 |
nnttcttccacatgaatattggttaccaagtcattaattttaatcctgcag |
161 |
Q |
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| T |
29998343 |
aa-acttccacatgaatattggttaccaagtcattaattttaatcctgcag |
29998294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 29998252 - 29998216
Alignment:
| Q |
203 |
cccctttttctagaatgttcaatgagaaacccagatc |
239 |
Q |
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||||||||||||||||||| || |||||||||||||| |
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| T |
29998252 |
cccctttttctagaatgtttaaagagaaacccagatc |
29998216 |
T |
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