View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1254_low_89 (Length: 253)
Name: NF1254_low_89
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_low_89 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 253
Target Start/End: Complemental strand, 24517882 - 24517642
Alignment:
| Q |
13 |
aaggtgacacgagaaagtggagaaaaaagttcttttcgtggaccaatgacacaattcatctctttctttaatgtatccatgtttcactgtgggatattca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24517882 |
aaggtgacacgagaaagtggagaaaaaagttcttttcgtggaccaatgacacaattcatctctttctttaatgtatccatgtttcactgtgggatattca |
24517783 |
T |
|
| Q |
113 |
aattccctaacctttcctcccatcgtggtcttacattaaaataataataaccgtgaatgaaaaactgnnnnnnnnnnnnnncacatgttgtgaatgatgg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24517782 |
aattccctaacctttcctcccatcgtggtcttacattaaaataataataaccgtgaatgaaaaactgtatatatatatacacacatgttgtgaatgatgg |
24517683 |
T |
|
| Q |
213 |
atccaagcatagttcaataatcaaattcatttcgatttttc |
253 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24517682 |
atccaagcatagttccataatcaaattcatttcgatttttc |
24517642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University