View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_low_90 (Length: 252)
Name: NF1254_low_90
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_low_90 |
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| [»] chr2 (3 HSPs) |
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| [»] chr4 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0649 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 3 - 252
Target Start/End: Complemental strand, 21021530 - 21021280
Alignment:
| Q |
3 |
catgtcgaataatatggttcagatgaaagacctcgttaaagtttggttaaaattatctcacttgatctggggaaggagacatacatgcaattgtcgcccc |
102 |
Q |
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||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21021530 |
catgttgaaaaatatggttcagatgaaagacctcattaaagtttggttaaaattatctcacttgatctggggaaggagacatacatgcaattgtcgcccc |
21021431 |
T |
|
| Q |
103 |
ctcatgattttgacgaagttccatattttgctccaactgtttgagtgttgatggaatgtc-tttgttttacttattgttcaaaggaatataattttacta |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
21021430 |
gtcatgattttgacgaagttccatattttgctccaactgtttgcgtgttgatggaatgtcttttgttttacttattattcaaaggaatataattttacta |
21021331 |
T |
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| Q |
202 |
tatggcagatgaaggaatttagagttgaaaagtcatggactaaattactta |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
21021330 |
tatggcagatgaaggaatttagagttgaaaagtcatggactaaattgctta |
21021280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 247
Target Start/End: Original strand, 25698445 - 25698561
Alignment:
| Q |
131 |
tgctccaactgtttgagtgttgatggaatgtctttgttttacttattgttcaaaggaatataattttactatatggcagatgaaggaatttagagttgaa |
230 |
Q |
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|||||||||| |||| |||||||||| ||||||||||||| || ||| |||| | || ||||||| ||||||||| |||| |||||| |||||||| |
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| T |
25698445 |
tgctccaactctttgcgtgttgatgggatgtctttgtttttctcattactcaaggttatctaattttgttatatggcaaatgagagaatttggagttgaa |
25698544 |
T |
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| Q |
231 |
aagtcatggactaaatt |
247 |
Q |
| |
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| || ||||||||||| |
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| T |
25698545 |
gactcttggactaaatt |
25698561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 245
Target Start/End: Complemental strand, 20699649 - 20699458
Alignment:
| Q |
54 |
attatctcacttgatctggggaaggagacatacatgcaattgtcgccccctcatgattttgacgaagttccatattttgctccaactgtttgagtgttga |
153 |
Q |
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||||||||||||||| |||| | ||||| |||| |||| || || |||| |||||||| ||||| ||| |||| |||| ||||| ||| ||| |
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| T |
20699649 |
attatctcacttgatttgggaacagagacttacacgcaaatgctccctcctcgagattttgatgaagtgccactttttatgccaattgtttccgtgctga |
20699550 |
T |
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| Q |
154 |
tggaatgtctttgttttacttattgttcaaaggaatataattttactatatggcagatgaaggaatttagagttgaaaagtcatggactaaa |
245 |
Q |
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|| | ||||||||||||| ||||||| |||||| |||||||| |||||||||||||| |||||| |||||||| ||| ||||||||| |
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| T |
20699549 |
tgaattgtctttgttttagccattgttccaaggaaaataattttgttatatggcagatgagagaatttcgagttgaagcgtcttggactaaa |
20699458 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 252
Target Start/End: Original strand, 3565686 - 3565803
Alignment:
| Q |
135 |
ccaactgtttgagtgttgatggaatgtctttgttttacttattgttcaaaggaatataattttactatatggcagatgaaggaatttagagttgaaaagt |
234 |
Q |
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||||||||| | ||||||| ||| || ||||||||| ||||||||| ||| || |||||| |||||||||||||||||||||| | |||||| ||| |
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| T |
3565686 |
ccaactgttggtgtgttgagggactgcctttgtttttcttattgttataagaaaaccgattttattatatggcagatgaaggaatttggggttgaagagt |
3565785 |
T |
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| Q |
235 |
catggactaaattactta |
252 |
Q |
| |
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| |||||| |||| |||| |
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| T |
3565786 |
cttggactcaatttctta |
3565803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 252
Target Start/End: Original strand, 3557680 - 3557785
Alignment:
| Q |
147 |
gtgttgatggaatgtctttgttttacttattgttcaaaggaatataattttactatatggcagatgaaggaatttagagttgaaaagtcatggactaaat |
246 |
Q |
| |
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||||||| ||| |||||||||||| |||||| || |||||| |||||| ||||||||| |||||||||||| | |||||| |||| |||||| ||| |
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| T |
3557680 |
gtgttgagggactgtctttgtttttcttattcttacaaggaaaccgattttattatatggcatatgaaggaatttggggttgaagagtcttggactcaat |
3557779 |
T |
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| Q |
247 |
tactta |
252 |
Q |
| |
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| |||| |
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| T |
3557780 |
ttctta |
3557785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 53774847 - 53774899
Alignment:
| Q |
200 |
tatatggcagatgaaggaatttagagttgaaaagtcatggactaaattactta |
252 |
Q |
| |
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||||||||| |||||||||||| |||||||| |||| |||||| |||| |||| |
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| T |
53774847 |
tatatggcaaatgaaggaatttggagttgaagagtcttggactcaattcctta |
53774899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 18952967 - 18952926
Alignment:
| Q |
201 |
atatggcagatgaaggaatttagagttgaaaagtcatggact |
242 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
18952967 |
atatggcagatgaaggaatttggagttgacaagtcatggact |
18952926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 252
Target Start/End: Complemental strand, 660910 - 660858
Alignment:
| Q |
200 |
tatatggcagatgaaggaatttagagttgaaaagtcatggactaaattactta |
252 |
Q |
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|||||||||||||||||||||| |||||||| |||| |||||| |||| |||| |
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| T |
660910 |
tatatggcagatgaaggaatttcgagttgaagagtcttggactcaattcctta |
660858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 18983014 - 18982973
Alignment:
| Q |
201 |
atatggcagatgaaggaatttagagttgaaaagtcatggact |
242 |
Q |
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|
||||||||||||||||||||| ||||||| ||||| |||||| |
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| T |
18983014 |
atatggcagatgaaggaatttggagttgacaagtcctggact |
18982973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 18997660 - 18997619
Alignment:
| Q |
201 |
atatggcagatgaaggaatttagagttgaaaagtcatggact |
242 |
Q |
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|
||||||||||||||||||||| ||||||| ||||| |||||| |
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| T |
18997660 |
atatggcagatgaaggaatttggagttgacaagtcctggact |
18997619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 19597717 - 19597676
Alignment:
| Q |
201 |
atatggcagatgaaggaatttagagttgaaaagtcatggact |
242 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
19597717 |
atatggcagatgaaggaatttgaagttgaagagtcatggact |
19597676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 19604531 - 19604474
Alignment:
| Q |
195 |
tttactatatggcagatgaaggaatttagagttgaaaagtcatggactaaattactta |
252 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||| | || |||||| |||| |||| |
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|
| T |
19604531 |
tttattatatggcagatgaaggaatttggagttgaagactcctggactcaattcctta |
19604474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 19645692 - 19645651
Alignment:
| Q |
201 |
atatggcagatgaaggaatttagagttgaaaagtcatggact |
242 |
Q |
| |
|
||||||||||||||||||||| || ||||| ||||||||||| |
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| T |
19645692 |
atatggcagatgaaggaatttggaattgaagagtcatggact |
19645651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 9807831 - 9807871
Alignment:
| Q |
200 |
tatatggcagatgaaggaatttagagttgaaaagtcatgga |
240 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||| |||| |
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| T |
9807831 |
tatatggcagatgaaggaatttggagttgaagagtcttgga |
9807871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 39379131 - 39379072
Alignment:
| Q |
193 |
attttactatatggcagatgaaggaatttagagttgaaaagtcatggactaaattactta |
252 |
Q |
| |
|
|||||| |||||||||||||||||||||| | |||||| |||| |||||| |||| |||| |
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|
| T |
39379131 |
attttattatatggcagatgaaggaatttggggttgaagagtcttggactcaatttctta |
39379072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 5407 - 5488
Alignment:
| Q |
162 |
ctttgttttacttattgttcaaaggaatataattttactatatggcagatgaaggaatttagagttgaaaagtcatggacta |
243 |
Q |
| |
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||||||||| | ||| ||| |||||| || ||||| ||||||||||||||| |||||||||||||| |||| ||||||| |
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| T |
5407 |
ctttgtttttgtcattattctaaggaaaatgattttgttatatggcagatgaaaaaatttagagttgaagagtcttggacta |
5488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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