View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_low_91 (Length: 251)
Name: NF1254_low_91
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_low_91 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 3 - 210
Target Start/End: Original strand, 259616 - 259822
Alignment:
| Q |
3 |
tctgcctattgctgcttattccattgaaaaaagaaccagtgttcttactcgtgcgatgcacatataactttatttgtgattgattgttatagaatatata |
102 |
Q |
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| T |
259616 |
tctgcctattgctgcttattccgttgaaaaaagaaccagtgttcttactcgtgcgatgcacatataactttatttgtgattgtttgttatagaatatata |
259715 |
T |
|
| Q |
103 |
atttctttgttgcattttaaaattggtacatcaattttgcacaactttcaagataattatatgtatcattcatgtgttataaaagataaaataatgtcaa |
202 |
Q |
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| T |
259716 |
atttcttt-ttgcattttaaaattggtacatcaattttgcacaactttcaagataattatatgtatcattcatgtgttataaaagataaaataatgtcaa |
259814 |
T |
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| Q |
203 |
tcatattt |
210 |
Q |
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|||||||| |
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| T |
259815 |
tcatattt |
259822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 3 - 210
Target Start/End: Complemental strand, 656305 - 656099
Alignment:
| Q |
3 |
tctgcctattgctgcttattccattgaaaaaagaaccagtgttcttactcgtgcgatgcacatataactttatttgtgattgattgttatagaatatata |
102 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
656305 |
tctgcctattgctgcttattccgttgaaaaaagaaccagtgttcttactcgtgcgatgcacatataactttatttgtgattgtttgttatagaatatata |
656206 |
T |
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| Q |
103 |
atttctttgttgcattttaaaattggtacatcaattttgcacaactttcaagataattatatgtatcattcatgtgttataaaagataaaataatgtcaa |
202 |
Q |
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| T |
656205 |
atttcttt-ttgcattttaaaattggtacatcaattttgcacaactttcaagataattatatgtatcattcatgtgttataaaagataaaataatgtcaa |
656107 |
T |
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| Q |
203 |
tcatattt |
210 |
Q |
| |
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|||||||| |
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| T |
656106 |
tcatattt |
656099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 3 - 210
Target Start/End: Complemental strand, 842040 - 841834
Alignment:
| Q |
3 |
tctgcctattgctgcttattccattgaaaaaagaaccagtgttcttactcgtgcgatgcacatataactttatttgtgattgattgttatagaatatata |
102 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
842040 |
tctgcctattgctgcttattccgttgaaaaaagaaccagtgttcttactcgtgcgatgcacatataactttatttgtgattgtttgttatagaatatata |
841941 |
T |
|
| Q |
103 |
atttctttgttgcattttaaaattggtacatcaattttgcacaactttcaagataattatatgtatcattcatgtgttataaaagataaaataatgtcaa |
202 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
841940 |
atttcttt-ttgcattttaaaattggtacatcaattttgcacaactttcaagataattatatgtatcattcatgtgttataaaagataaaataatgtcaa |
841842 |
T |
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| Q |
203 |
tcatattt |
210 |
Q |
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|||||||| |
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| T |
841841 |
tcatattt |
841834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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