View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1254_low_93 (Length: 251)

Name: NF1254_low_93
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1254_low_93
NF1254_low_93
[»] chr2 (4 HSPs)
chr2 (71-251)||(21021046-21021237)
chr2 (71-104)||(20967948-20967981)
chr2 (71-111)||(20699223-20699263)
chr2 (71-111)||(20712292-20712332)
[»] chr7 (9 HSPs)
chr7 (72-111)||(19645455-19645494)
chr7 (79-112)||(20456760-20456793)
chr7 (71-111)||(22524939-22524979)
chr7 (72-111)||(19325748-19325787)
chr7 (72-111)||(20133097-20133136)
chr7 (79-112)||(20415137-20415170)
chr7 (71-111)||(20057831-20057871)
chr7 (71-111)||(21218473-21218513)
chr7 (71-111)||(29872023-29872063)
[»] scaffold0097 (1 HSPs)
scaffold0097 (71-111)||(16131-16171)
[»] scaffold0649 (1 HSPs)
scaffold0649 (71-111)||(5694-5734)
[»] scaffold0128 (1 HSPs)
scaffold0128 (71-111)||(4402-4442)
[»] chr8 (1 HSPs)
chr8 (71-111)||(27618726-27618766)
[»] chr5 (3 HSPs)
chr5 (71-111)||(23087053-23087093)
chr5 (71-111)||(29597332-29597372)
chr5 (71-111)||(42298376-42298416)
[»] chr4 (1 HSPs)
chr4 (71-111)||(53775100-53775140)


Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 71 - 251
Target Start/End: Original strand, 21021046 - 21021237
Alignment:
Q  71 gaacttactttcaacaagttgaaaccaaactttcaacataacgctccataaaaaaccaatataggccatattgtacaattttatctactctattatctct 170  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21021046 gaacttactttcaacaagttgaaaccaaactttcaacataatgctcgataaaaaaccaatataggccatattgtacaattttatctactctattatctct 21021145  T
Q  171 c---------agaattactcgtcgttggtcatcgcttgccaatatcaatatatcaccattctcaaaa--ttgcaatggcagcaaataacaat 251  Q
    |         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  21021146 cctattatagagaattactcgtcgttggtcatcgcttgccaatatcaatatatcaccattctcaaaaacatgcaatggcagcaaataacaat 21021237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 104
Target Start/End: Complemental strand, 20967981 - 20967948
Alignment:
Q  71 gaacttactttcaacaagttgaaaccaaactttc 104  Q
    ||||||||||||||||||||||||||||||||||    
T  20967981 gaacttactttcaacaagttgaaaccaaactttc 20967948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 20699223 - 20699263
Alignment:
Q  71 gaacttactttcaacaagttgaaaccaaactttcaacataa 111  Q
    |||||||||||||| |||||||||| |||||||||||||||    
T  20699223 gaacttactttcaaaaagttgaaactaaactttcaacataa 20699263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 20712292 - 20712332
Alignment:
Q  71 gaacttactttcaacaagttgaaaccaaactttcaacataa 111  Q
    |||||||||||||||||||||||||||| ||||| ||||||    
T  20712292 gaacttactttcaacaagttgaaaccaagctttcgacataa 20712332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 19645455 - 19645494
Alignment:
Q  72 aacttactttcaacaagttgaaaccaaactttcaacataa 111  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  19645455 aacttactttcaacaagttgaaaccaaactttcaacataa 19645494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 112
Target Start/End: Complemental strand, 20456793 - 20456760
Alignment:
Q  79 tttcaacaagttgaaaccaaactttcaacataac 112  Q
    ||||||||||||||||||||||||||||||||||    
T  20456793 tttcaacaagttgaaaccaaactttcaacataac 20456760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 22524939 - 22524979
Alignment:
Q  71 gaacttactttcaacaagttgaaaccaaactttcaacataa 111  Q
    |||||||||||||| ||||||||||||| ||||||||||||    
T  22524939 gaacttactttcaagaagttgaaaccaagctttcaacataa 22524979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 19325748 - 19325787
Alignment:
Q  72 aacttactttcaacaagttgaaaccaaactttcaacataa 111  Q
    |||||||||||||||| ||||| |||||||||||||||||    
T  19325748 aacttactttcaacaaattgaagccaaactttcaacataa 19325787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 20133097 - 20133136
Alignment:
Q  72 aacttactttcaacaagttgaaaccaaactttcaacataa 111  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  20133097 aacttactttcaacaatatgaaaccaaactttcaacataa 20133136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 112
Target Start/End: Complemental strand, 20415170 - 20415137
Alignment:
Q  79 tttcaacaagttgaaaccaaactttcaacataac 112  Q
    ||||||||||||||||||| ||||||||||||||    
T  20415170 tttcaacaagttgaaaccagactttcaacataac 20415137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 20057831 - 20057871
Alignment:
Q  71 gaacttactttcaacaagttgaaaccaaactttcaacataa 111  Q
    ||||||||| ||||||||||||| |||| ||||||||||||    
T  20057831 gaacttactatcaacaagttgaagccaagctttcaacataa 20057871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 21218473 - 21218513
Alignment:
Q  71 gaacttactttcaacaagttgaaaccaaactttcaacataa 111  Q
    |||||||||||||| ||||||||||||| ||||| ||||||    
T  21218473 gaacttactttcaagaagttgaaaccaagctttcgacataa 21218513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 29872063 - 29872023
Alignment:
Q  71 gaacttactttcaacaagttgaaaccaaactttcaacataa 111  Q
    |||||||||||||| || ||||||| |||||||||||||||    
T  29872063 gaacttactttcaaaaaattgaaactaaactttcaacataa 29872023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 16131 - 16171
Alignment:
Q  71 gaacttactttcaacaagttgaaaccaaactttcaacataa 111  Q
    |||||||||||||||||||||||||||| ||||| ||||||    
T  16131 gaacttactttcaacaagttgaaaccaagctttcgacataa 16171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0649 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0649
Description:

Target: scaffold0649; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 5734 - 5694
Alignment:
Q  71 gaacttactttcaacaagttgaaaccaaactttcaacataa 111  Q
    ||||||||||||||||||  |||||||||||||||| ||||    
T  5734 gaacttactttcaacaagcagaaaccaaactttcaatataa 5694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 4442 - 4402
Alignment:
Q  71 gaacttactttcaacaagttgaaaccaaactttcaacataa 111  Q
    |||||||||||||| ||||||||||||| ||||| ||||||    
T  4442 gaacttactttcaagaagttgaaaccaagctttcgacataa 4402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 27618766 - 27618726
Alignment:
Q  71 gaacttactttcaacaagttgaaaccaaactttcaacataa 111  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  27618766 gaacttactttcaagaaattgaaaccaagctttcaacataa 27618726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 23087093 - 23087053
Alignment:
Q  71 gaacttactttcaacaagttgaaaccaaactttcaacataa 111  Q
    |||||||||| |||||||| |||||||| ||||||||||||    
T  23087093 gaacttacttccaacaagtcgaaaccaagctttcaacataa 23087053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 29597332 - 29597372
Alignment:
Q  71 gaacttactttcaacaagttgaaaccaaactttcaacataa 111  Q
    ||||||||||||||||| | ||| |||||||||||||||||    
T  29597332 gaacttactttcaacaaatcgaagccaaactttcaacataa 29597372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 42298416 - 42298376
Alignment:
Q  71 gaacttactttcaacaagttgaaaccaaactttcaacataa 111  Q
    |||||||||||||| ||||||||||||| ||||| ||||||    
T  42298416 gaacttactttcaagaagttgaaaccaagctttcgacataa 42298376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 53775140 - 53775100
Alignment:
Q  71 gaacttactttcaacaagttgaaaccaaactttcaacataa 111  Q
    |||||||||||||||| ||||| ||||| ||||||||||||    
T  53775140 gaacttactttcaacacgttgataccaagctttcaacataa 53775100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University