View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1255-Insertion-10 (Length: 396)

Name: NF1255-Insertion-10
Description: NF1255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1255-Insertion-10
NF1255-Insertion-10
[»] chr5 (6 HSPs)
chr5 (7-189)||(26791747-26791930)
chr5 (7-174)||(26777977-26778145)
chr5 (7-188)||(26745318-26745498)
chr5 (7-132)||(26729224-26729350)
chr5 (41-126)||(26834431-26834517)
chr5 (155-211)||(26729087-26729141)
[»] scaffold0233 (1 HSPs)
scaffold0233 (7-162)||(17364-17520)
[»] scaffold0112 (2 HSPs)
scaffold0112 (8-198)||(17466-17657)
scaffold0112 (7-198)||(26172-26368)
[»] scaffold0093 (1 HSPs)
scaffold0093 (7-198)||(20714-20904)
[»] scaffold0416 (1 HSPs)
scaffold0416 (7-126)||(7695-7815)
[»] scaffold0759 (1 HSPs)
scaffold0759 (11-126)||(1997-2115)
[»] chr3 (9 HSPs)
chr3 (41-126)||(13042307-13042393)
chr3 (41-126)||(13050384-13050470)
chr3 (55-214)||(12109330-12109478)
chr3 (38-92)||(30137397-30137451)
chr3 (38-92)||(30143526-30143580)
chr3 (38-92)||(30146948-30147002)
chr3 (102-162)||(12127247-12127307)
chr3 (38-92)||(30069338-30069392)
chr3 (38-92)||(30132579-30132633)
[»] chr6 (1 HSPs)
chr6 (56-92)||(35162547-35162583)


Alignment Details
Target: chr5 (Bit Score: 101; Significance: 6e-50; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 7 - 189
Target Start/End: Complemental strand, 26791930 - 26791747
Alignment:
Q  7 aaaaatatacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa-aagagaaagtta 104  Q
    ||||||||||||||||||| |||| || ||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||  ||| |||    
T  26791930 aaaaatatacatacagaatgtggtgagcatg-aagacagccaaattagcaagcttaacataagtcattgtttgatcaaaagaaagaataagctaaaatta 26791832  T
Q  105 tttgttatgaacttagcttagtcttgcattagttcattcttacatgcaacaatttatatagaggtccatacgctaactgacacta 189  Q
    |||||||||||||||||||||| ||||||||||||||| ||| |||||| |||||||| |||||| ||||  |||||||||||||    
T  26791831 tttgttatgaacttagcttagtgttgcattagttcattgttatatgcaagaatttatagagaggtgcatatactaactgacacta 26791747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 7 - 174
Target Start/End: Original strand, 26777977 - 26778145
Alignment:
Q  7 aaaaatatacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa-aagagaaagtta 104  Q
    ||||||||||||||||||| |||| || ||| |||||||||||| || | ||||||||||||||||||||||||||||||||||||| |||  ||| |||    
T  26777977 aaaaatatacatacagaatgtggtgagcatg-aagacagccaaagtaacaagcttaacataagtcattgtttgatcaaaagaaagaataagctaaaatta 26778075  T
Q  105 tttgttatgaacttagcttagtcttgcattagttcattcttacatgcaacaatttatatagaggtccata 174  Q
    ||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||| ||||    
T  26778076 tttattatgaacttagcttagtgttgcattagttcattgttacatgcaacaatttatagagaggtgcata 26778145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 7 - 188
Target Start/End: Complemental strand, 26745498 - 26745318
Alignment:
Q  7 aaaaatatacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaaaagagaaagttat 105  Q
    |||| |||||||||||||||| || || ||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||| | ||  | | ||    
T  26745498 aaaattatacatacagaatatagtgagcatg-aagacagccaaagtagcaagcttaacataagtcattgtttgatcaaaagaaagaata-agctaatcat 26745401  T
Q  106 ttgttatgaacttagcttagtcttgcattagttcattcttacatgcaacaatttatatagaggtccatacgctaactgacact 188  Q
    ||||||||||||||||| ||| ||||||||||||||| |||||||||| |||||||| |||||| ||||  ||||| ||||||    
T  26745400 ttgttatgaacttagctcagtattgcattagttcattgttacatgcaagaatttatacagaggtgcatatactaaccgacact 26745318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 26729350 - 26729224
Alignment:
Q  7 aaaaatatacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa-aagagaaagtta 104  Q
    ||||||||||||||||||| |||| || ||| |||||||||||| ||||||||||||||||||||||| ||||||||||| |||||| |||  ||| |||    
T  26729350 aaaaatatacatacagaatgtggtgagcatg-aagacagccaaagtagcgagcttaacataagtcattctttgatcaaaataaagaataagctaaaatta 26729252  T
Q  105 tttgttatgaacttagcttagtcttgca 132  Q
    ||||| |||||||||||||||| |||||    
T  26729251 tttgtgatgaacttagcttagtgttgca 26729224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 41 - 126
Target Start/End: Complemental strand, 26834517 - 26834431
Alignment:
Q  41 acagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa-aagagaaagttatttgttatgaacttagcttagt 126  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||  ||| ||||||| |||||||||||||||||    
T  26834517 acagccaaagtagcaagcttaacataagtcattgtttgatcaaaagaaagaataagctaaaattatttgatatgaacttagcttagt 26834431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 26729141 - 26729087
Alignment:
Q  155 aatttatatagaggtccatacgctaactgacactaaagctccctcttattaaattga 211  Q
    |||||||| |||||||||||  ||||||||||||| ||||||  |||||||||||||    
T  26729141 aatttatagagaggtccatatactaactgacactatagctcc--cttattaaattga 26729087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 7 - 162
Target Start/End: Complemental strand, 17520 - 17364
Alignment:
Q  7 aaaaatatacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa-aagagaaagtta 104  Q
    |||||||||||||||||||||||| || ||| |||||||||||| ||| |||||||||||||| ||||||||||||||||||||||| |||  ||| |||    
T  17520 aaaaatatacatacagaatatggtgagcatg-aagacagccaaagtagagagcttaacataagacattgtttgatcaaaagaaagaataagctaaaatta 17422  T
Q  105 tttgttatgaacttagcttagtcttgcattagttcattcttacatgcaacaatttata 162  Q
    |||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  17421 tttgatatgaacttagcttagtgttgcattagttcattgttacatgcaacaatttata 17364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 89; Significance: 9e-43; HSPs: 2)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 17466 - 17657
Alignment:
Q  8 aaaatatacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa-aagagaaagttat 105  Q
    |||||||||||||| |||||||| || ||| |||||||||||| || | || |||||||||||||||||||||||||||||||||| |||  ||| ||||    
T  17466 aaaatatacatacaaaatatggtgagcatg-aagacagccaaagtaacaagtttaacataagtcattgtttgatcaaaagaaagaataagctaaaattat 17564  T
Q  106 ttgttatgaacttagcttagtcttgcattagttcattcttacatgcaacaatttatatagaggtccatacgctaactgacactaaagctccct 198  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||| |||||| | ||  ||| | ||||||| ||||||||    
T  17565 ttgttatgaacttagcttagtgttgcattagttcattgttacatgcaaaaatttatagagaggtgcgtatactagcagacactatagctccct 17657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 7 - 198
Target Start/End: Original strand, 26172 - 26368
Alignment:
Q  7 aaaaatatacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacataagtcattgtttg----atcaaaagaaagaa-aagagaaa 100  Q
    ||||||||||||||||||| |||| || ||| ||||||||| || || | |||||||||||||||||||||||    |||||||||||||| |||  |||    
T  26172 aaaaatatacatacagaatgtggtgagcatg-aagacagccgaagtaacaagcttaacataagtcattgtttgtttgatcaaaagaaagaataagctaaa 26270  T
Q  101 gttatttgttatgaacttagcttagtcttgcattagttcattcttacatgcaacaatttatatagaggtccatacgctaactgacactaaagctccct 198  Q
     ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||| ||||  ||| | ||||||| ||||||||    
T  26271 attatttgttatgaacttagcttagtgttgcattagttcattgttacatgcaacaatttatagagaggtgcatatactagcagacactatagctccct 26368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 7 - 198
Target Start/End: Complemental strand, 20904 - 20714
Alignment:
Q  7 aaaaatatacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa-aagagaaagtta 104  Q
    ||||||||||||||||||| |||| || ||| |||||||||||| || | |||||||||||||||||||||||||||||||||| || |||  ||| |||    
T  20904 aaaaatatacatacagaatgtggtgagcatg-aagacagccaaagtaacaagcttaacataagtcattgtttgatcaaaagaaataataagctaaaatta 20806  T
Q  105 tttgttatgaacttagcttagtcttgcattagttcattcttacatgcaacaatttatatagaggtccatacgctaactgacactaaagctccct 198  Q
    |||||||||||||||||||||| |||||||| ||| || |||||||||||||||  ||||||||||||||  ||| | ||||||| ||||||||    
T  20805 tttgttatgaacttagcttagtgttgcattaattccttgttacatgcaacaatt--tatagaggtccatatactagcagacactatagctccct 20714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0416 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 7 - 126
Target Start/End: Original strand, 7695 - 7815
Alignment:
Q  7 aaaaatatacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa-aagagaaagtta 104  Q
    ||||||||||||||||||| |||| || ||| |||||||||||| |||| |||||||||||||||||||||||||||||| |||||| |||  ||| |||    
T  7695 aaaaatatacatacagaatgtggtgagcatg-aagacagccaaattagcaagcttaacataagtcattgtttgatcaaaataaagaataagttaaaatta 7793  T
Q  105 tttgttatgaacttagcttagt 126  Q
    ||||||||||||||||||||||    
T  7794 tttgttatgaacttagcttagt 7815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0759 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 126
Target Start/End: Complemental strand, 2115 - 1997
Alignment:
Q  11 atatacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacata--agtcattgtttgatcaaaagaaagaa-aagagaaagttatt 106  Q
    ||||||||||||||| |||| || ||| |||||||||||| || |||||||||||||  ||||||||||||||||||| |||||| |||  ||| |||||    
T  2115 atatacatacagaatgtggtgagcatg-aagacagccaaagtaacgagcttaacatataagtcattgtttgatcaaaataaagaataagctaaaattatt 2017  T
Q  107 tgttatgaacttagcttagt 126  Q
    ||||||||||||||||||||    
T  2016 tgttatgaacttagcttagt 1997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 13042307 - 13042393
Alignment:
Q  41 acagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa-aagagaaagttatttgttatgaacttagcttagt 126  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||| || |||  ||| |||||| ||||||||||||||||||    
T  13042307 acagccaaagtagcaagcttaacataagtcattgtttgatcaaaagaaataataagctaaaattatttattatgaacttagcttagt 13042393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 13050384 - 13050470
Alignment:
Q  41 acagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa-aagagaaagttatttgttatgaacttagcttagt 126  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||| || |||  ||| |||||| ||||||||||||||||||    
T  13050384 acagccaaagtagcaagcttaacataagtcattgtttgatcaaaagaaataataagctaaaattatttattatgaacttagcttagt 13050470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 55 - 214
Target Start/End: Complemental strand, 12109478 - 12109330
Alignment:
Q  55 gagcttaacataagtcattgtttgatcaaaagaaagaaaagagaaagttatttgttatgaacttagcttagtcttgcattagttcattcttacatgcaac 154  Q
    ||||||||||||||||||||||| |||| |||||||||         |||||||  |||||||||||||| | ||||||||||||||| ||||||||| |    
T  12109478 gagcttaacataagtcattgtttaatcagaagaaagaa---------ttatttgaaatgaacttagcttattgttgcattagttcattgttacatgcatc 12109388  T
Q  155 aatttatatagaggtccatacgctaactgacactaaagctccctcttattaaattgagaa 214  Q
    |||||||| || |||||||   ||| ||| ||||| || |||  ||||||||||||||||    
T  12109387 aatttatagagcggtccatttactagctggcactacagttcc--cttattaaattgagaa 12109330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 30137397 - 30137451
Alignment:
Q  38 aagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa 92  Q
    ||||||||||||  ||| |||||||||||||||||||||  ||||||||||||||    
T  30137397 aagacagccaaaggagctagcttaacataagtcattgttctatcaaaagaaagaa 30137451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 30143526 - 30143580
Alignment:
Q  38 aagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa 92  Q
    ||||||||||||  ||| |||||||||||||||||||||  ||||||||||||||    
T  30143526 aagacagccaaaggagctagcttaacataagtcattgttctatcaaaagaaagaa 30143580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 30146948 - 30147002
Alignment:
Q  38 aagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa 92  Q
    ||||||||||||  ||| |||||||||||||||||||||  ||||||||||||||    
T  30146948 aagacagccaaaggagctagcttaacataagtcattgttctatcaaaagaaagaa 30147002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 12127307 - 12127247
Alignment:
Q  102 ttatttgttatgaacttagcttagtcttgcattagttcattcttacatgcaacaatttata 162  Q
    |||||||||||||||||| |||  | ||||||||||||||| || |||||| |||||||||    
T  12127307 ttatttgttatgaacttatcttgttgttgcattagttcattgttgcatgcatcaatttata 12127247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 30069338 - 30069392
Alignment:
Q  38 aagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa 92  Q
    |||||||| |||  ||| ||||||||||||| ||||| |||||||||||||||||    
T  30069338 aagacagcaaaaggagctagcttaacataagccattgattgatcaaaagaaagaa 30069392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 30132579 - 30132633
Alignment:
Q  38 aagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa 92  Q
    |||||||| |||  ||| |||||||||||||||||||||  ||||||||||||||    
T  30132579 aagacagcaaaaggagcaagcttaacataagtcattgttctatcaaaagaaagaa 30132633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 35162583 - 35162547
Alignment:
Q  56 agcttaacataagtcattgtttgatcaaaagaaagaa 92  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  35162583 agcttaacagaagccattgtttgatcaaaagaaagaa 35162547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University