View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1255-Insertion-11 (Length: 357)
Name: NF1255-Insertion-11
Description: NF1255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1255-Insertion-11 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 307
Target Start/End: Original strand, 2760036 - 2760350
Alignment:
| Q |
8 |
gtaatgaacaccaatagaaacagtgttgtaagatacatgatgatagtcgtagttggggtttgacacgaagagggtaatatcccattcggcagtgagttta |
107 |
Q |
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| T |
2760036 |
gtaatgaacaccaatagaaacagtgttgtaagatacacgatgatagtcgtagttggggtttgacacgaagagggtaatatcccattcggcagtgagttta |
2760135 |
T |
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| Q |
108 |
gaaccgtttatattaagtgaattgatggaagctaagtcgactccaaacattggagtactagggcccaagcttacaattaaatcaaccaagaaaa------ |
201 |
Q |
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| T |
2760136 |
gaacagtttatattaagtgacttgatggaagctaagtcgactccaaacattggagtactagggcccaagcttacaattaaatctaccaagaaaataacag |
2760235 |
T |
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| Q |
202 |
---------taaaaatgaaaaggaagagtaacccgatgcagtcgacgcatgtgttgtctgatagnnnnnnnnnnnntgctatgtcaatgaaaaggaatgt |
292 |
Q |
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| T |
2760236 |
aagtgcaattaaaaatgaaaaggaagagtaacccgatgcagtcgacgcatgtgttatctgatagaaaaagaaaaaaagctatgtcaatgaaaaggaatgt |
2760335 |
T |
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| Q |
293 |
aatgtataacaagaa |
307 |
Q |
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| T |
2760336 |
aatgtataacaagaa |
2760350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 2764401 - 2764572
Alignment:
| Q |
8 |
gtaatgaacaccaatagaaacagtgttgtaagatacatgatgatagtcgtagttggggtttgacacgaagagggtaatatcccattcggcagtgagttta |
107 |
Q |
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| T |
2764401 |
gtaattaacaccaattgaagcagtgtcgtaagatacaggatgaaaattttcgttagggtttgacacaatgagagtaatatcccattcggcagtgagttta |
2764500 |
T |
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| Q |
108 |
gaaccgtttatattaagtgaattgatggaagctaagtcgactccaaacattggagtactagggcccaagctt |
179 |
Q |
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| T |
2764501 |
gaaccgtttatattaagtgagttgatcgtagccaagtcgactcgaaaccttggtgttctagggcccaggctt |
2764572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 2769293 - 2769378
Alignment:
| Q |
14 |
aacaccaatagaaacagtgttgtaagatacatgatgatagtcgtagttggggtttgacacgaagagggtaatatcccattcggcag |
99 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
2769293 |
aacaccaatagaaacagtgtcgtaagatacaggatgatagtcgtagttggggtttgacacgtagagggtaacatcccattcggcag |
2769378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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