View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1255-Insertion-4 (Length: 438)
Name: NF1255-Insertion-4
Description: NF1255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1255-Insertion-4 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 6 - 438
Target Start/End: Complemental strand, 1407715 - 1407283
Alignment:
| Q |
6 |
cagcctaaagggtgaagcaatagatatgggaaaattagcttttaagacttcaattaatttgttgtctaatactgttttctctgtagactttgctaataac |
105 |
Q |
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| T |
1407715 |
cagcctaaagggtgaagcaatagatatgggaaaattagcttttaagacttcaattaatttgttgtctaatactgttttctctgtagactttgctaataac |
1407616 |
T |
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| Q |
106 |
aaggatttggttatggatatgtcggagacggttggatctccaaacatggctgannnnnnnccattgttgaggttgattgatccacaaggcatcaaaagga |
205 |
Q |
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| T |
1407615 |
aaggatttggttatggatatgtcggagacggttggatctccaaacatggctgatttttttccattgttgaggttgattgatccacaaggcatcaaaagga |
1407516 |
T |
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| Q |
206 |
cctatgtgttttatgtaggaaagttgtttggtatctttgacaatataatcgatcaaaagttgaaattgcgagaaggggatggttttgtcaccaacaacga |
305 |
Q |
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| T |
1407515 |
cctatgtgttttatgtaggaaagttgtttggtatctttgacaacataatcgatcaaaagttgaaattgcgagaaggggatggttttgtcgccaacaacga |
1407416 |
T |
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| Q |
306 |
tatgttagactcgttgctcgctgaagaaaacaaaaaggagttggacagagaaaaaattcaacatttactacatgtattttcaaatctcttactatttaca |
405 |
Q |
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| T |
1407415 |
tatgttagactcgttgctcgctgaagaaaacaaaaaggagttggacagagaaaaaattcaacatttactacatgtattttctaatctcttactatttaca |
1407316 |
T |
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| Q |
406 |
atcatgatgtttgatctctctttctttagtcca |
438 |
Q |
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| T |
1407315 |
atcatgatgtttgatctctctttctttagtcca |
1407283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 6 - 420
Target Start/End: Original strand, 1363709 - 1364121
Alignment:
| Q |
6 |
cagcctaaagggtgaagcaatagatatgggaaaattagcttttaagacttcaattaatttgttgtctaatactgttttctctgtagactttgctaataac |
105 |
Q |
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| T |
1363709 |
cagcctaaagggtgaagcaatagatatgggaaaattagcttttaagacttcaattaatttgttgtctaatactgttttctctgtagactttgctaataac |
1363808 |
T |
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| Q |
106 |
aaggatttggttatggatatgtcggagacggttggatctccaaacatggctgannnnnnnccattgttgaggttgattgatccacaaggcatcaaaagga |
205 |
Q |
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| T |
1363809 |
aaggatttggttatggatatgtcggagacggttggatctccaaacatggctgatttttttccattgttgaggttgattgatccacaaggcatcaaaagga |
1363908 |
T |
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| Q |
206 |
cctatgtgttttatgtaggaaagttgtttggtatctttgacaatataatcgatcaaaagttgaaattgcgagaaggggatggttttgtcaccaacaacga |
305 |
Q |
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| T |
1363909 |
cctatgtgttttatgtaggaaagttgtttggtatctttgacaacataatcgatcaaaagttgaaattgcgagaaggggatggttttgtcaccaacaacga |
1364008 |
T |
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| Q |
306 |
tatgttagactcgttgctcgctgaagaaaacaaaaaggagttggacagagaaaaaattcaacatttactacatgtattttcaaatctcttactatttaca |
405 |
Q |
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| T |
1364009 |
tatgttagactccttgctcgctgaagaaaacaaaaaggagttggacagagaaaaaattcaacatttactacatgtattttctaa--tcttactatttaca |
1364106 |
T |
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| Q |
406 |
atcatgatgtttgat |
420 |
Q |
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| T |
1364107 |
attatgatgtttgat |
1364121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 106 - 399
Target Start/End: Original strand, 1369357 - 1369656
Alignment:
| Q |
106 |
aaggatttggttatggatatgtcggagacggttggatctccaaacatggctgannnnnnnccattgttgaggttgattgatccacaaggcatcaaaagga |
205 |
Q |
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| T |
1369357 |
aaggatttggttatgaatatggcagagacggttggaaagccaaacatggctgattttttcccattattgaggttgattgatccacaaggcatcaaaaaga |
1369456 |
T |
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| Q |
206 |
cctatgtgttttatgtaggaaagttgtttggtatctttgacaatataatcgatcaaaagttgaaattgcgagaaggggatggttttgtcaccaacaacga |
305 |
Q |
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| T |
1369457 |
cctatatgttttatattggaaagttgttcaatgtcttcgacaacataatcgaccaaaggttgaagttgcgagaagaggatggttttttcaccaacaacga |
1369556 |
T |
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| Q |
306 |
tatgttagactcgttgctcg------ctgaagaaaacaaaaaggagttggacagagaaaaaattcaacatttactacatgtattttcaaatctcttacta |
399 |
Q |
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| T |
1369557 |
catgctagactccttgctcgacattcctgaagaaaacagaaaggagttggatagagaaaaaattgaacatttattacatgtattttctaatcccttacta |
1369656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 1369234 - 1369326
Alignment:
| Q |
13 |
aagggtgaagcaatagatatgggaaaattagcttttaagacttcaattaatttgttgtctaatactgttttctctgtagactttgctaataac |
105 |
Q |
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| T |
1369234 |
aagggtgaagcaatagatatgggaaaagtagcttttaggacttcaattaatatgttgtcaaatactattttttctgtagactttgctaataac |
1369326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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