View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1255-Insertion-5 (Length: 708)
Name: NF1255-Insertion-5
Description: NF1255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1255-Insertion-5 |
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| [»] chr8 (8 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 624; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 9 - 708
Target Start/End: Complemental strand, 35854192 - 35853487
Alignment:
| Q |
9 |
tttttcccttggaatatgtataatcttgttagcaataaactgaaataattcatcttagttcatgtttgtttatggttatttgctatttgaaaaatgcttt |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35854192 |
tttttcccttggaatatgtataatcttgttagcaataaactgaaataattcatcttagttcatgtttgtttatggttatttgctatttgaaaaatgcttt |
35854093 |
T |
|
| Q |
109 |
aaagccaaaattgcttgaactcttcgatcaaaagttttttgacagaaa--catactagttcaaataaataccattatgggtagggttgaatgagttgagc |
206 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35854092 |
gaagccaaaattgcttgaactcttcgatcaaaagttttttgacagaaaaacatactagttcaaataaataccattatgggtagggttgaatgagttgagc |
35853993 |
T |
|
| Q |
207 |
catccatcccaagcctagttcaaacagaagtgttccactgaataagaaatcattcttaacttcatggctcaatttggcttaatttatcctcccttgcttt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35853992 |
catccatcccaagcctagttcaaacagaagtgttccactgaataagaaatcattcttaacttcatggctcaatttggcttaatttatcctcccttgcttt |
35853893 |
T |
|
| Q |
307 |
tggagttcaatgatccaatcttgtattaactgagtctttcagcnnnnnnngtatgtgtttgtttcattagcgctcttgcaatttgtctc-ttgaactttg |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35853892 |
tggagttcaatgatccaatcttgtattaactgagtctttcagctttttttgtatgtgtttgtttcattagcgctcttgcaatttgtctctttgaactttg |
35853793 |
T |
|
| Q |
406 |
tctgatgctctttgattcatttcatttgcattccaagatttcttccttttacgagcgctaatttgcacctgaatatcctgttcaggtgcaatttttgtgt |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35853792 |
tctgatgctctttgattcatttcatttgcattccaagatttcttccttttacgagcgctaatttgcacctgaatatcctgttcaggtgcaatttttgtgt |
35853693 |
T |
|
| Q |
506 |
ctggtgttttcgcagctgcttgtagtttaccatttgaatatgtgataattcaaattaacaagatgcaacctgacgctgaagggaaattatccatacacta |
605 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35853692 |
ctggtgtttccgcagctgcttgtagtttaccatttgaatatgtgataattcaaattaacaagatgcaacctgacgctgaagggaaa-tatccatacacta |
35853594 |
T |
|
| Q |
606 |
gctttcttgactgtgctgtcgaaacatttaagg-----caggaggacctttgaagttttacactggattccctatctattgtgccaaggattactccgca |
700 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35853593 |
gctttcttgactgtgctgtcgaaacatttaaggcaggacaggaggacctttgaagttttacactggattccctatctattgtgcc-aggattactccgca |
35853495 |
T |
|
| Q |
701 |
agtcatag |
708 |
Q |
| |
|
|||||||| |
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|
| T |
35853494 |
agtcatag |
35853487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 27 - 686
Target Start/End: Complemental strand, 35858745 - 35858091
Alignment:
| Q |
27 |
tataatcttgttagcaataaactgaaataattcatcttagttcatgtttgtttatggttatttgctatttgaaaaatgctttaaagccaaaattgcttga |
126 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| || |||||||||||| || ||||||||||||| ||||| ||||| || |||||||||||||| |
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| T |
35858745 |
tataatcttgatagcaataaactgaaataattcatctcaggtcatgtttgtttctgattatttgctatttaaaaaacgcttttaatccaaaattgcttga |
35858646 |
T |
|
| Q |
127 |
actcttcgatcaaaagttttttgacagaaa--catactagttcaaataaataccattatgggtagggttgaatgagttgagccatccatcccaagcctag |
224 |
Q |
| |
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|||||| ||| |||||||||| ||||||| ||||||||||||||||||||||||| | || ||| |||||||||||| | |||||| ||| ||||| |
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| T |
35858645 |
actctttgattgaaagttttttcacagaaaaacatactagttcaaataaataccattttctgttgggctgaatgagttgaactatccatgccaggcctat |
35858546 |
T |
|
| Q |
225 |
ttcaaacagaagtgttccactgaataagaaatcattcttaacttcatggctcaatttggcttaatttatcctcccttgcttttggagttcaatgatccaa |
324 |
Q |
| |
|
||||||| ||||| ||| ||||||| |||||||| ||||||||||||| |||||||| ||||||||||||||| | |||| ||||| |||||||||||| |
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| T |
35858545 |
ttcaaactgaagttttcaactgaattagaaatcaatcttaacttcatgactcaattttacttaatttatcctccgtagcttgtggagctcaatgatccaa |
35858446 |
T |
|
| Q |
325 |
tcttgtattaactgagtctt-tcagcnnnnnnngtatgtgtttgtttcattagcgctcttgcaatttgtctcttgaactttgtctgatgctctttgattc |
423 |
Q |
| |
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|||| ||| |||||||| | | ||||| ||||||||||| || ||| |||||||||||| |||||||||||||||||||| ||| |
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| T |
35858445 |
tcttttat----tgagtcttcatacctttttctatatgt-tttgtttcatttttactattgaaatttgtctctt-aactttgtctgatgctcttttcttc |
35858352 |
T |
|
| Q |
424 |
atttcatttgcattccaagatttcttccttttacgagcgctaatttgcacctgaatatcctgttcaggtgcaatttttgtgtctggtgttttcgcagctg |
523 |
Q |
| |
|
|||| ||||||| |||||| ||| ||||||| || | |||||| || |||| | || ||| ||||| |||||||||| | | || ||||||| |
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|
| T |
35858351 |
attttatttgcactccaaggttt-ttcctttattgaacactaattcgctactgagtttcttgtccaggtacaatttttgtagccacttttcctgcagctg |
35858253 |
T |
|
| Q |
524 |
cttgtagtttaccatttgaatatgtgataattcaaattaacaagatgcaacctgacgctgaagggaaattatccatacactagctttcttgactgtgctg |
623 |
Q |
| |
|
||| |||||||||||||||||||||| ||| ||||||| |||||||||||||| | |||||||| |||||||||||| ||| | |||||||||||| |
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| T |
35858252 |
tttgctgtttaccatttgaatatgtgatgattgaaattaagaagatgcaacctgatgacaaagggaaa-tatccatacactggctatgttgactgtgctg |
35858154 |
T |
|
| Q |
624 |
tcgaaacatttaaggcaggaggacctttgaagttttacactggattccctatctattgtgcca |
686 |
Q |
| |
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|| |||| | | ||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
35858153 |
tcaaaactctcatagcaggaggacctttgaagttttacactggattctccgtctattgtgcca |
35858091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 364 - 683
Target Start/End: Original strand, 35748467 - 35748783
Alignment:
| Q |
364 |
tttgtttcattagcgctcttgcaatttgtctcttgaactttgtctgatgctctttgattcatttcatttgcattccaagatttcttccttttacgag-cg |
462 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||||||| | |||||| | ||| ||||| || |||||||||| || || | |
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| T |
35748467 |
tttgtttcattagtgctcttgcaatttgtctcttgaactttgtttgatgctctgt--ttcattctacctgctttccatgagttcttccttt-actagacc |
35748563 |
T |
|
| Q |
463 |
ctaatttgcacctgaatatcctgttcaggtgcaatttttgtgtctggtgttttcgcagctgcttgtagtttaccatttgaatatgtgataattcaaatta |
562 |
Q |
| |
|
||||||||| || |||| |||||||||||||||||||| ||| | ||| ||||||||||| ||||||||| ||||||||||||| ||||| ||| |
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| T |
35748564 |
ctaatttgctattggatattttgttcaggtgcaatttttgtatctattatttatgcagctgcttgcagtttaccagttgaatatgtgatgattcagattc |
35748663 |
T |
|
| Q |
563 |
acaagatgcaacctgacgctgaagggaaattatccatacactagctttcttgactgtgctgtcgaaacatttaaggcaggaggacctttgaagttttaca |
662 |
Q |
| |
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| || ||||||||||| |||||||||||| ||||||||||| |||||||||| || |||||| |||| | || ||||||||| |||||| ||||||| |
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| T |
35748664 |
agaatatgcaacctgatgctgaagggaaa-tatccatacaccggctttcttgattgcgctgtcaaaacctacaaagcaggaggaattttgaaattttaca |
35748762 |
T |
|
| Q |
663 |
ctggattccctatctattgtg |
683 |
Q |
| |
|
||||||||||| ||||||||| |
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|
| T |
35748763 |
ctggattccctctctattgtg |
35748783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 486 - 683
Target Start/End: Original strand, 35729138 - 35729334
Alignment:
| Q |
486 |
ttcaggtgcaatttttgtgtctggtgttttcgcagctgcttgtagtttaccatttgaatatgtgataattcaaattaacaagatgcaacctgacgctgaa |
585 |
Q |
| |
|
||||||||||| | ||| ||||| |||||||||| ||||| ||||| |||||||| ||||||| | || ||| | |||||||||||||| |||||| |
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|
| T |
35729138 |
ttcaggtgcaagtagtgtatctggatttttcgcagcagcttgcagtttgccatttgattatgtgaagacacagattcagaagatgcaacctgatgctgaa |
35729237 |
T |
|
| Q |
586 |
gggaaattatccatacactagctttcttgactgtgctgtcgaaacatttaaggcaggaggacctttgaagttttacactggattccctatctattgtg |
683 |
Q |
| |
|
|| |||| | ||||||||| | | |||||||||||| ||| |||| || || ||||||||||| || || |||||||||||||||||| |||| |||| |
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|
| T |
35729238 |
ggaaaat-acccatacactggttctcttgactgtgccgtcaaaaccttcaaagcaggaggacccttcaaattttacactggattccctgtctactgtg |
35729334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 243 - 345
Target Start/End: Original strand, 35727703 - 35727805
Alignment:
| Q |
243 |
actgaataagaaatcattcttaacttcatggctcaatttggcttaatttatcctcccttgcttttggagttcaatgatccaatcttgtattaactgagtc |
342 |
Q |
| |
|
|||||||||||||||| |||||| | ||||| ||||||||||||||||| ||||| |||||||| ||||||| |||||||||||| || |||||| |
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|
| T |
35727703 |
actgaataagaaatcagtcttaattgcatggtccaatttggcttaatttaagttccctgacttttggaactcaatgagccaatcttgtataaattgagtc |
35727802 |
T |
|
| Q |
343 |
ttt |
345 |
Q |
| |
|
||| |
|
|
| T |
35727803 |
ttt |
35727805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 35727496 - 35727545
Alignment:
| Q |
42 |
aataaactgaaataattcatcttagttcatgtttgtttatggttatttgc |
91 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| || || |||||||| |
|
|
| T |
35727496 |
aataaactgaaatatttcatcttagttcatgtttggttttgattatttgc |
35727545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 35748233 - 35748330
Alignment:
| Q |
110 |
aagccaaaattgcttgaactcttcgatcaaaagttttttgacagaaaca---tactagttcaaataaataccattatgggtagggttgaatgagttga |
204 |
Q |
| |
|
|||||||||||||| ||||| || ||| | ||||||||| | ||||| | |||||||||||| ||||||||| || ||| ||||||||||||||| |
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| T |
35748233 |
aagccaaaattgctagaactatttgattagaagttttttaatagaaaaaatatactagttcaaaccaataccattttgtgtaaggttgaatgagttga |
35748330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 587 - 688
Target Start/End: Complemental strand, 35759985 - 35759884
Alignment:
| Q |
587 |
ggaaattatccatacactagctttcttgactgtgctgtcgaaacatttaaggcaggaggacctttgaagttttacactggattccctatctattgtgcca |
686 |
Q |
| |
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||||| ||||||||||| ||| |||||||||||||||| |||| || | ||||||||||| || || |||| ||||||||| || || |||||||| |
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| T |
35759985 |
ggaaaatatccatacaccggctatcttgactgtgctgtcaaaaccttccaagcaggaggaccattcaatttttttactggattctctctcatttgtgcca |
35759886 |
T |
|
| Q |
687 |
ag |
688 |
Q |
| |
|
|| |
|
|
| T |
35759885 |
ag |
35759884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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