View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1255-Insertion-6 (Length: 754)

Name: NF1255-Insertion-6
Description: NF1255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1255-Insertion-6
NF1255-Insertion-6
[»] chr8 (1 HSPs)
chr8 (7-754)||(41301714-41302478)


Alignment Details
Target: chr8 (Bit Score: 583; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 7 - 754
Target Start/End: Complemental strand, 41302478 - 41301714
Alignment:
Q  7 atttatggcaaaccttttctcaaggccacaacacccatgaaaaaatgacaatattgagcggtatacctctttgaaacgttcccatctaagcatttatgag 106  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41302478 atttatggcaaaccttttctcaaggccacaacacgcatgaaaaaatgacaatattgagcggtatacctctttgaaacgttcccatctaagcatttatgag 41302379  T
Q  107 gtgcatatccctgataagttatttttaccattggagtttcatagggggtaacccgtagaaaaatagggcaggaaaataaatttaatacttcccaaaaaag 206  Q
    ||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41302378 gtgcatatccctgataagttatttttaccattggattttattagggggtaacccgtagaaaaatagggcaggaaaataaatttaatacttcccaaaaaag 41302279  T
Q  207 aaatattttaaattttgggagtaatcgg----------gtgtttttcttatagtggaactttctttctttcaagaatctcatcatgattatataaccctt 296  Q
    ||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41302278 aaatattttaaattttgggagtaatcggaaaaccagttgtgtttttcttatagtggaactttctttctttcaagagtctcatcatgattatataaccctt 41302179  T
Q  297 agtaaatcatttgtgtgttggtattctattagtgtgcgatgggtcgagaatgagcatataagatttcatatnnnnnnnnnnccagcttaa-------tac 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||       |||    
T  41302178 agtaaatcatttgtgtgttggtattctattagtgtgcgatgggtcgagaatgagcatataagatttcatataaaaaaac--ccagcttaaatagtaatac 41302081  T
Q  390 atatttttggaggccaattatatgatgcataaatgagata-gatggtcttacattatgcacaaactatttatcattggatcattaaaataattagatatg 488  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41302080 atatttttggaggccaattatatgatgcataaatgagatacgaaggtcttacattatgcacaaactatttatcattggatcattaaaataattagatatg 41301981  T
Q  489 atgtgatgcgccttattaattcaatggtgaagaagacatttgtgtatgatgcaagatcttcttacttatgcatattagacaaaaccatatatgaaaataa 588  Q
    |||||||||||||||||||||||||||| || |||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41301980 atgtgatgcgccttattaattcaatggtaaaaaagatatttgtatatgatgtaagatcttcttacttatgcatattagacaaaaccatatatgaaaataa 41301881  T
Q  589 atacttgtatattacattttcttatgaggctgactccaatttcaatactccgttcacatatattttgtcttctgaactacatatacaattgtgtttgaat 688  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41301880 atacttgtatattacattttcttatgaggctgactccaatttcaatactccgttcacatatattttgtcttctgaactacatatacaattgtgtttgaat 41301781  T
Q  689 aaat-cnnnnnnnnttatctttaactagataagacgagggaatgcagttaattctcaacattttcta 754  Q
    ||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41301780 aaataaataaataattatctttaactagataagacgagggaatgcagttaattctcaacattttcta 41301714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University