View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12550_high_3 (Length: 450)

Name: NF12550_high_3
Description: NF12550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12550_high_3
NF12550_high_3
[»] chr4 (7 HSPs)
chr4 (19-256)||(10426696-10426932)
chr4 (254-349)||(10427623-10427718)
chr4 (254-348)||(9199750-9199845)
chr4 (287-348)||(9199512-9199573)
chr4 (254-305)||(9201332-9201384)
chr4 (287-348)||(12094864-12094925)
chr4 (287-348)||(24257703-24257764)
[»] chr7 (5 HSPs)
chr7 (21-222)||(4410741-4410938)
chr7 (254-348)||(20077317-20077412)
chr7 (254-348)||(4407779-4407872)
chr7 (260-341)||(30061499-30061581)
chr7 (224-252)||(4407898-4407926)
[»] chr8 (5 HSPs)
chr8 (254-349)||(26981034-26981130)
chr8 (254-348)||(26083903-26083998)
chr8 (259-348)||(5334273-5334363)
chr8 (291-348)||(42932716-42932773)
chr8 (318-350)||(7496756-7496788)
[»] chr6 (3 HSPs)
chr6 (257-349)||(31442516-31442609)
chr6 (262-348)||(20915980-20916067)
chr6 (279-348)||(7867948-7868018)
[»] chr5 (2 HSPs)
chr5 (259-348)||(6697935-6698025)
chr5 (254-311)||(9045160-9045218)
[»] chr3 (4 HSPs)
chr3 (254-323)||(11582599-11582669)
chr3 (295-351)||(2241513-2241569)
chr3 (272-350)||(39484801-39484881)
chr3 (279-349)||(15291460-15291530)
[»] chr2 (3 HSPs)
chr2 (277-348)||(38996518-38996590)
chr2 (277-349)||(22625385-22625458)
chr2 (279-348)||(28125536-28125606)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-119; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 10426696 - 10426932
Alignment:
Q  19 agataagaccttggaggcatgtgtatcattcaaattgatcaattccaatgtgctgaattaataaatatacaatggtgttgataggatttggaaatatgca 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10426696 agataagaccttg-aggcatgtgtatcattcaaattgatcaattccaatgtgctgaaataataaatatacaatggtgttgataggatttggaaatatgca 10426794  T
Q  119 tcagataagtcttcagccgcacataggagaagctaccaaggatattttcaacttcccttacatttacgatgcagcttatatttattaagataagattagt 218  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10426795 tcagataagtcttcagccgcgcaaaggagaagctaccaaggatattttcaacttcccttacatttacgatgcagcttatatttattaagataagattagt 10426894  T
Q  219 gcatcaagtcacatgttaagaaggtagcaatgaaccta 256  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10426895 gcatcaagtcacatgttaagaaggtagcaatgaaccta 10426932  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 254 - 349
Target Start/End: Original strand, 10427623 - 10427718
Alignment:
Q  254 ctaaggagaatttaatacttggatgatggagggaaatattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagata 349  Q
    ||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| || ||||| ||| |||||||    
T  10427623 ctaagaagaatttaatgcttggatgatggagggaaatattaggttaaaattagggtatgatattgcttgaccaaacaacctttaataaaaaagata 10427718  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 254 - 348
Target Start/End: Complemental strand, 9199845 - 9199750
Alignment:
Q  254 ctaaggagaatttaatacttggatgatggaggg-aaatattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 348  Q
    |||||||||||||||| |||||||||||||||| |||||||| ||||| | | || ||||||||||||||| || | |||||||||||||||||||    
T  9199845 ctaaggagaatttaatgcttggatgatggagggaaaatattaggttaatagtgggatatgatattgcttgaccagacaagctttagtaagaaagat 9199750  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 287 - 348
Target Start/End: Complemental strand, 9199573 - 9199512
Alignment:
Q  287 aaatattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 348  Q
    |||||||| |||||||||||||||||||||||||||| || | |||||||||||||||||||    
T  9199573 aaatattaggttaaaattagggtatgatattgcttgaccagacaagctttagtaagaaagat 9199512  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 9201384 - 9201332
Alignment:
Q  254 ctaaggagaatttaatacttggatgatggaggg-aaatattaagttaaaatta 305  Q
    |||||||||||||||| |||||||||||| ||| |||||||| ||||||||||    
T  9201384 ctaaggagaatttaatgcttggatgatggtgggaaaatattaggttaaaatta 9201332  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 348
Target Start/End: Original strand, 12094864 - 12094925
Alignment:
Q  287 aaatattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 348  Q
    |||||||| |||||||||||||| |   || |||||| |||| |||||||||||||||||||    
T  12094864 aaatattaggttaaaattagggtttctaatagcttgaccaaacaagctttagtaagaaagat 12094925  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 348
Target Start/End: Complemental strand, 24257764 - 24257703
Alignment:
Q  287 aaatattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 348  Q
    |||||||| ||||||||||||||     ||||||||| |||| |||||||||||||||||||    
T  24257764 aaatattaggttaaaattagggtgaacaattgcttgaccaaacaagctttagtaagaaagat 24257703  T

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Target: chr7 (Bit Score: 133; Significance: 5e-69; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 21 - 222
Target Start/End: Complemental strand, 4410938 - 4410741
Alignment:
Q  21 ataagaccttggaggcatgtgtatcattcaaattgatcaattccaatgtgctgaattaataaatatacaatggtgttgataggatttggaaatatgcatc 120  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||    
T  4410938 ataagaccttggaggcatgtgtaccattcacattgatcaattccaatgtgctgaattaattaatatacaatggtgctgataggatttgaaaatatgcatc 4410839  T
Q  121 agataagtcttcagccgcacataggagaagctaccaaggatattttcaacttcccttacatttacgatgcagcttatatttattaagataagattagtgc 220  Q
    |||| |||| |     ||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||| ||    
T  4410838 agatcagtcat----tgcacaaaggagaagctaccaaggatattttcaactttccttacatttacgatgcaacttatgtttattaagataagattagcgc 4410743  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 254 - 348
Target Start/End: Original strand, 20077317 - 20077412
Alignment:
Q  254 ctaaggagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 348  Q
    |||||| ||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  20077317 ctaaggtgaatttaatgcttggatgatggagggaaaatattaggttaaaattagggtatgatattgcttgaccaaacaagctttagtaagaaagat 20077412  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 254 - 348
Target Start/End: Complemental strand, 4407872 - 4407779
Alignment:
Q  254 ctaaggagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 348  Q
    ||||||||||||||||  |||| ||||||||||||| ||||| |||||||||||||||||||||||||||| |  ||| |||||||||||||||||    
T  4407872 ctaaggagaatttaatgtttgggtgatggagggaaaatattaggttaaaattagggtatgatattgcttgacc--agacgctttagtaagaaagat 4407779  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 341
Target Start/End: Complemental strand, 30061581 - 30061499
Alignment:
Q  260 agaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaa 341  Q
    |||||| |||||||| |  ||||||||||| ||||| | | |||||||||||||| || ||||||||| | ||||||||||||    
T  30061581 agaattaaatacttgtacaatggagggaaaatattagggttaaattagggtatgagatagcttgatcagacaagctttagtaa 30061499  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 252
Target Start/End: Complemental strand, 4407926 - 4407898
Alignment:
Q  224 aagtcacatgttaagaaggtagcaatgaa 252  Q
    |||||||||||||||||||||||||||||    
T  4407926 aagtcacatgttaagaaggtagcaatgaa 4407898  T

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Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 254 - 349
Target Start/End: Complemental strand, 26981130 - 26981034
Alignment:
Q  254 ctaaggagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagata 349  Q
    |||||||||||||||| ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26981130 ctaaggagaatttaatgcttggatgatggaggaaaaatattaggttaaaattagggtatgatattgcttgatcaaacaagctttagtaagaaagata 26981034  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 254 - 348
Target Start/End: Complemental strand, 26083998 - 26083903
Alignment:
Q  254 ctaaggagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 348  Q
    ||||| |||||||||| ||| ||||||||||||||| ||||| |||||||||||||||||||||||||||| || | |||||||||||||||||||    
T  26083998 ctaagaagaatttaatgctttgatgatggagggaaaatattaggttaaaattagggtatgatattgcttgaccagacaagctttagtaagaaagat 26083903  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 259 - 348
Target Start/End: Complemental strand, 5334363 - 5334273
Alignment:
Q  259 gagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 348  Q
    ||||||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||| ||||||| | ||  |||| ||||||||||    
T  5334363 gagaatttaatgcttggatgatggagggaaaatcttaggttaaaattagggtatgatattgtttgatcagataatttttaataagaaagat 5334273  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 348
Target Start/End: Complemental strand, 42932773 - 42932716
Alignment:
Q  291 attaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 348  Q
    |||| |||||||||||| |||||||||||||||||| | |||||||||||||||||||    
T  42932773 attaggttaaaattaggatatgatattgcttgatcagacaagctttagtaagaaagat 42932716  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 350
Target Start/End: Complemental strand, 7496788 - 7496756
Alignment:
Q  318 gcttgatcaaagaagctttagtaagaaagataa 350  Q
    ||||||||||| |||||||||||||||||||||    
T  7496788 gcttgatcaaacaagctttagtaagaaagataa 7496756  T

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Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 257 - 349
Target Start/End: Complemental strand, 31442609 - 31442516
Alignment:
Q  257 aggagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagata 349  Q
    ||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||  ||||||||| |||| ||||||||||||||||||||    
T  31442609 aggagaatttaatgcttggatgatggagggaaaatattaggttaaaattagggtatgtgattgcttgaccaaacaagctttagtaagaaagata 31442516  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 262 - 348
Target Start/End: Original strand, 20915980 - 20916067
Alignment:
Q  262 aatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 348  Q
    |||||||| ||||||||||||||||||| ||||| |||||||||| ||||| |||||||||||||| | |||||||||||||||||||    
T  20915980 aatttaatgcttggatgatggagggaaaatattaggttaaaattaaggtatcatattgcttgatcagacaagctttagtaagaaagat 20916067  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 348
Target Start/End: Original strand, 7867948 - 7868018
Alignment:
Q  279 atggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 348  Q
    ||||||||||| ||||| | | |||||||||||||| || |||||| || | |||||||||||||||||||    
T  7867948 atggagggaaaatattagggttaaattagggtatgagatagcttgaccagataagctttagtaagaaagat 7868018  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 259 - 348
Target Start/End: Complemental strand, 6698025 - 6697935
Alignment:
Q  259 gagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 348  Q
    ||||||||||| |||| |||||||||||||| ||||| |||||||||| ||||||| ||||||||| || | ||| |||||||||||||||    
T  6698025 gagaatttaatgcttgcatgatggagggaaaatattaggttaaaattaaggtatgagattgcttgaccagacaagttttagtaagaaagat 6697935  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 311
Target Start/End: Complemental strand, 9045218 - 9045160
Alignment:
Q  254 ctaaggagaatttaatacttggatgatggaggg-aaatattaagttaaaattagggtat 311  Q
    ||||||||||||||||  || |||||||||||| |||||||| ||||||||||||||||    
T  9045218 ctaaggagaatttaatgttttgatgatggagggaaaatattaggttaaaattagggtat 9045160  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 254 - 323
Target Start/End: Complemental strand, 11582669 - 11582599
Alignment:
Q  254 ctaaggagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttga 323  Q
    ||||| ||||||||||  |||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  11582669 ctaagaagaatttaatgtttggatgacggagggaaaatattaggttaaaattagggtatgatattgcttga 11582599  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 351
Target Start/End: Original strand, 2241513 - 2241569
Alignment:
Q  295 agttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagataag 351  Q
    ||||||||||| ||||||| |||||||||  ||| |||||||||||||||| |||||    
T  2241513 agttaaaattaaggtatgaaattgcttgacgaaacaagctttagtaagaaaaataag 2241569  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 350
Target Start/End: Original strand, 39484801 - 39484881
Alignment:
Q  272 ttggatgatggagggaaa-tattaagttaaaattagggt-atgatattgcttgatcaaagaagctttagtaagaaagataa 350  Q
    |||| ||||||||||||| ||||| ||||||| |||||| |  |||| |||||| |||| |||||||||||||||||||||    
T  39484801 ttgggtgatggagggaaaatattaggttaaaactagggtgaacatatagcttgaccaaacaagctttagtaagaaagataa 39484881  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 349
Target Start/End: Complemental strand, 15291530 - 15291460
Alignment:
Q  279 atggagggaaatattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagata 349  Q
    ||||||||||| |||| ||||| |||||||||    || |||||| |||| ||||||||||||||||||||    
T  15291530 atggagggaaaaattaggttaagattagggtaaacaatagcttgaccaaacaagctttagtaagaaagata 15291460  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 277 - 348
Target Start/End: Original strand, 38996518 - 38996590
Alignment:
Q  277 tgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 348  Q
    ||||||||||||| ||||| |||||||||||||||  |||| ||||||||| | |||||||||||||||||||    
T  38996518 tgatggagggaaaatattaggttaaaattagggtaacatatagcttgatcagacaagctttagtaagaaagat 38996590  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 349
Target Start/End: Original strand, 22625385 - 22625458
Alignment:
Q  277 tgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagata 349  Q
    ||||||||||||| ||||| ||||||||||||||||   ||||||||| || | ||| ||||||||||||||||    
T  22625385 tgatggagggaaaatattaggttaaaattagggtatccaattgcttgaccagacaagttttagtaagaaagata 22625458  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 348
Target Start/End: Complemental strand, 28125606 - 28125536
Alignment:
Q  279 atggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 348  Q
    ||||||||||| ||||| | | |||||||||||||| || |||||| || | |||||||||||||||||||    
T  28125606 atggagggaaaatattagggttaaattagggtatgagatagcttgaccagacaagctttagtaagaaagat 28125536  T

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