View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12550_low_11 (Length: 217)
Name: NF12550_low_11
Description: NF12550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12550_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 14733335 - 14733153
Alignment:
| Q |
18 |
caatggagataagatattccctcaacgattggcctattttatcacacagattgaaaccaaatatgatcggtcctaaaacattttatgtagatacaagacc |
117 |
Q |
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| T |
14733335 |
caatggagatacgatattccctcaacgattggcctattttatcatacagattgaaaccaaatatgatcggtcctaaaacattttatgtagatacaagagc |
14733236 |
T |
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| Q |
118 |
tgtttcaaagaataacaagagcatgaaacaagttaccattttcataataaccaagaaaaagttcaggcttaagagagggatcagtg |
203 |
Q |
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| T |
14733235 |
tgtttcaaagaataacaagagcatgaaacaagttaccattttc---ataaccaagaaaaagttcaggcttaagagagggattagtg |
14733153 |
T |
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