View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12550_low_2 (Length: 549)

Name: NF12550_low_2
Description: NF12550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12550_low_2
NF12550_low_2
[»] chr8 (7 HSPs)
chr8 (1-307)||(42346900-42347206)
chr8 (303-535)||(42346641-42346873)
chr8 (341-432)||(29787307-29787398)
chr8 (378-476)||(32331887-32331986)
chr8 (385-476)||(41302873-41302965)
chr8 (148-188)||(32331666-32331706)
chr8 (100-192)||(43190122-43190214)
[»] chr1 (6 HSPs)
chr1 (3-241)||(33928700-33928942)
chr1 (30-244)||(37501864-37502082)
chr1 (308-432)||(37502234-37502358)
chr1 (308-432)||(12975594-12975718)
chr1 (309-409)||(7504540-7504640)
chr1 (376-432)||(33929169-33929225)
[»] chr4 (3 HSPs)
chr4 (308-477)||(43859701-43859871)
chr4 (28-193)||(10406205-10406374)
chr4 (315-456)||(2522070-2522212)
[»] chr3 (5 HSPs)
chr3 (31-271)||(32925531-32925777)
chr3 (66-271)||(34545777-34545985)
chr3 (344-477)||(32925253-32925387)
chr3 (397-477)||(41942667-41942748)
chr3 (119-190)||(28681777-28681849)
[»] chr2 (2 HSPs)
chr2 (38-214)||(36284272-36284455)
chr2 (316-432)||(36284640-36284756)
[»] chr5 (3 HSPs)
chr5 (331-458)||(8232131-8232260)
chr5 (147-271)||(3548881-3549005)
chr5 (309-469)||(3549131-3549292)
[»] chr7 (2 HSPs)
chr7 (316-432)||(29371175-29371291)
chr7 (304-395)||(18702678-18702769)


Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 42347206 - 42346900
Alignment:
Q  1 ctcccctatcataatacggtatctatggtgcactcacaacaagttggtgttggtggtatccaactaatagtctcaactacggtttcagtttattcgcaat 100  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  42347206 ctcccctatcataatacggtacctatggtgcactcaaaacaagttggtgttgatggtatccaactaatagtctcaactacggtttcagtttattcgcaat 42347107  T
Q  101 tgcaagtttcacaatgcacattcaacaatattgtttcaaccagttgagttaggcccactcatgaagtatgttggcagcatggtgataatgataaaacggt 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42347106 tgcaagtttcacagtgcacattcaacaatattgtttcaaccagttgagttaggcccactcatgaagtatgttggcagcatggtgataatgataaaacggt 42347007  T
Q  201 tctcaatgtggatggaagcattttaactaatccaggtaaagtagactatggtgaattggttaggagttttgccttctatggtagtgtaggtttgtccaat 300  Q
     |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42347006 actcaatgtggatggaagcgttttaactaatccaggtaaagtagactatggtgaattggttaggagttttgccttctatggtagtgtaggtttgtccaat 42346907  T
Q  301 attttgt 307  Q
    |||||||    
T  42346906 attttgt 42346900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 303 - 535
Target Start/End: Complemental strand, 42346873 - 42346641
Alignment:
Q  303 tttgttttttcggactctctttatgtgatgcatttagtgtcaaaggaagtgatgaggcttcaccgctatgcggacctcttgaagctcattcaggtgtatt 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42346873 tttgttttttcggactctctttatgtgatgcatttagtgtcaaaggaagtgatgaggcttcaccgctatgcggacctcttggagctcattcaggtgtatt 42346774  T
Q  403 tgtttaagaagtgagatatttccattcatcgtgattttggaaaggaaactcttgcgcatatgtacttgctaaacttgacactaatctcattcagagtatt 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42346773 tgtttaagaagtgagatatttccattcatcgtgattttggaaaggaaactcttgcgcatatgtacttgctaaacttggcactaatctcattcagagtatt 42346674  T
Q  503 ttgtgacgatgcttcaaccgttatcttgtctct 535  Q
    |||||||||||||||||||||||||||||||||    
T  42346673 ttgtgacgatgcttcaaccgttatcttgtctct 42346641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 341 - 432
Target Start/End: Complemental strand, 29787398 - 29787307
Alignment:
Q  341 gtcaaaggaagtgatgaggcttcaccgctatgcggacctcttgaagctcattcaggtgtatttgtttaagaagtgagatatttccattcatc 432  Q
    |||||||||||||  ||||||||| | |||||   ||||||||||||||||| |  |||||||| ||||| ||||| |||||||||||||||    
T  29787398 gtcaaaggaagtgtcgaggcttcatcactatgtaaacctcttgaagctcatttaaatgtatttggttaaggagtgaaatatttccattcatc 29787307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 476
Target Start/End: Original strand, 32331887 - 32331986
Alignment:
Q  378 ctcttgaagctcattcaggtgtatttgtttaagaagtgagatatttccattcatcgtgattttgga-aaggaaactcttgcgcatatgtacttgctaaac 476  Q
    |||||| |||| |||||| |||||||| ||||| ||||||||||||||||||||| |  |||| || | ||||||||||||||| || ||||||| ||||    
T  32331887 ctcttggagcttattcagatgtatttggttaaggagtgagatatttccattcatcatatttttagagagggaaactcttgcgcagatatacttgcaaaac 32331986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 476
Target Start/End: Complemental strand, 41302965 - 41302873
Alignment:
Q  385 agctcattcaggtgtatttgtttaagaagtgagatatttccattcatcgtgattttgga-aaggaaactcttgcgcatatgtacttgctaaac 476  Q
    |||| |||||| | |||||| ||||| |||| |||||||||||||||| |  |||| || | |||||||||||||||||| ||||||| ||||    
T  41302965 agcttattcagatatatttggttaaggagtgggatatttccattcatcatatttttagagagggaaactcttgcgcatatatacttgcaaaac 41302873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 32331666 - 32331706
Alignment:
Q  148 gttaggcccactcatgaagtatgttggcagcatggtgataa 188  Q
    ||||||||||||||||||||||| || || |||||||||||    
T  32331666 gttaggcccactcatgaagtatgctgccaacatggtgataa 32331706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 192
Target Start/End: Original strand, 43190122 - 43190214
Alignment:
Q  100 ttgcaagtttcacaatgcacattcaacaatattgtttcaaccagttgagttaggcccactcatgaagtatgttggcagcatggtgataatgat 192  Q
    ||||||||||||||  |  ||||  ||| |||||||||| ||  || |||||| ||||||||||||| ||||||||| ||  |||||||||||    
T  43190122 ttgcaagtttcacagcgagcatttgacagtattgtttcagccgctttagttagacccactcatgaagcatgttggcaacacagtgataatgat 43190214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 5e-45; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 3 - 241
Target Start/End: Original strand, 33928700 - 33928942
Alignment:
Q  3 cccctatcataatacggtatctatggtgcactcacaacaagttggtgttgg-tggtatccaactaatagtctcaactacggtttc---agtttattcgca 98  Q
    |||||||||||||  || | |||||||||| || ||||||||||||||| | |||||| |||||  |||||||||||||  ||||   ||||||| ||||    
T  33928700 cccctatcataatgtggaacctatggtgcattcgcaacaagttggtgtttgatggtattcaactgctagtctcaactacaatttctgcagtttatacgca 33928799  T
Q  99 attgcaagtttcacaatgcacattcaacaatattgtttcaaccagttgagttaggcccactcatgaagtatgttggcagcatggtgataatgataaaacg 198  Q
    |||||||||||||||  |  ||||| |||||| | ||||||||   | |||||||||||||||||||||||||||||| |||||||||||||||| || |    
T  33928800 attgcaagtttcacagagggcattcgacaatactatttcaaccgcattagttaggcccactcatgaagtatgttggcaacatggtgataatgatacaatg 33928899  T
Q  199 gttctcaatgtggatggaagcattttaactaatccaggtaaag 241  Q
    ||||| ||||||||||| |||  ||||||||| ||||||||||    
T  33928900 gttcttaatgtggatggcagcgctttaactaacccaggtaaag 33928942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 30 - 244
Target Start/End: Original strand, 37501864 - 37502082
Alignment:
Q  30 gcactcacaacaagttggtg-ttggtggtatccaactaatagtctcaactacggtttca---gtttattcgcaattgcaagtttcacaatgcacattcaa 125  Q
    |||||| ||||||||||||| ||| || |||||||  ||||||||||||||  ||||||   ||||||  ||||||||||||||||||| |  |||||||    
T  37501864 gcactcgcaacaagttggtgattgatgttatccaatcaatagtctcaactatagtttcaattgtttatgtgcaattgcaagtttcacaacgggcattcaa 37501963  T
Q  126 caatattgtttcaaccagttgagttaggcccactcatgaagtatgttggcagcatggtgataatgataaaacggttctcaatgtggatggaagcatttta 225  Q
    ||||||| ||| ||||   | |||||||||||||||||||||||||| | |||||||||||||||||| || |||||| ||||| ||||  | || |||     
T  37501964 caatattattttaaccgcattagttaggcccactcatgaagtatgttagtagcatggtgataatgatacaatggttcttaatgtagatgacaacactttg 37502063  T
Q  226 actaatccaggtaaagtag 244  Q
    ||||| ||| |||||||||    
T  37502064 actaacccaagtaaagtag 37502082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 308 - 432
Target Start/End: Original strand, 37502234 - 37502358
Alignment:
Q  308 tttttcggactctctttatgtgatgcatttagtgtcaaaggaagtgatgaggcttcaccgctatgcggacctcttgaagctcattcaggtgtatttgttt 407  Q
    |||||| ||||||||| ||||  || ||||||||||||||||||||  ||||||||| | ||||| | |||||||||| || |||| | ||||||||  |    
T  37502234 tttttctgactctcttcatgtagtgtatttagtgtcaaaggaagtgtcgaggcttcatcactatgtgaacctcttgaaacttattcggatgtatttggat 37502333  T
Q  408 aagaagtgagatatttccattcatc 432  Q
    ||||||||| |||||| ||||||||    
T  37502334 aagaagtgaaatattttcattcatc 37502358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 308 - 432
Target Start/End: Complemental strand, 12975718 - 12975594
Alignment:
Q  308 tttttcggactctctttatgtgatgcatttagtgtcaaaggaagtgatgaggcttcaccgctatgcggacctcttgaagctcattcaggtgtatttgttt 407  Q
    |||||| ||||||||| ||||  |||| ||||| |||||| ||||  |||||||||| | ||||||  | || ||| |||| |||||| |||||||| ||    
T  12975718 tttttctgactctcttcatgtagtgcaattagtttcaaagaaagtattgaggcttcatcactatgcaaatcttttggagcttattcagatgtatttggtt 12975619  T
Q  408 aagaagtgagatatttccattcatc 432  Q
    ||| |||| ||||||||||||||||    
T  12975618 aaggagtgggatatttccattcatc 12975594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 309 - 409
Target Start/End: Original strand, 7504540 - 7504640
Alignment:
Q  309 ttttcggactctctttatgtgatgcatttagtgtcaaaggaagtgatgaggcttcaccgctatgcggacctcttgaagctcattcaggtgtatttgttta 408  Q
    ||||| ||||||||| ||||  |||||||||||||||| ||||||  ||| || |||| ||||| | |||||||| || |||||  | |||||||| |||    
T  7504540 ttttctgactctcttcatgtagtgcatttagtgtcaaaagaagtgccgagactccaccactatgtgaacctcttggagttcatttggatgtatttggtta 7504639  T
Q  409 a 409  Q
    |    
T  7504640 a 7504640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 432
Target Start/End: Original strand, 33929169 - 33929225
Alignment:
Q  376 acctcttgaagctcattcaggtgtatttgtttaagaagtgagatatttccattcatc 432  Q
    |||||||| |||| |||||| |||||||  ||||| |||| ||||||||||||||||    
T  33929169 acctcttggagcttattcagatgtatttagttaaggagtgggatatttccattcatc 33929225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 308 - 477
Target Start/End: Complemental strand, 43859871 - 43859701
Alignment:
Q  308 tttttcggactctctttatgtgatgcatttagtgtcaaaggaagtgatgaggcttcaccgctatgcggacctcttgaagctcattcaggtgtatttgttt 407  Q
    |||||| |||||  |||||||  ||| |||| ||||||||||||||  ||| ||||||||||||||  || ||||| |||||||||||||||||||| ||    
T  43859871 tttttctgactcattttatgtagtgcgtttaatgtcaaaggaagtgtcgagacttcaccgctatgcaaacatcttggagctcattcaggtgtatttggtt 43859772  T
Q  408 aagaagtgagatatttccattcatcgtgattttgga-aaggaaactcttgcgcatatgtacttgctaaact 477  Q
    ||  |||||||||||||||||||||||  |||| || ||||||||||| ||||| || || ||||||||||    
T  43859771 aaagagtgagatatttccattcatcgtatttttcgagaaggaaactctagcgcaaatatatttgctaaact 43859701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 28 - 193
Target Start/End: Original strand, 10406205 - 10406374
Alignment:
Q  28 gtgcactcacaacaagttggtgttgg-tggtatccaactaatagtctcaactacggtttca---gtttattcgcaattgcaagtttcacaatgcacattc 123  Q
    |||||||||||||||| || |||| | ||||||| ||| |||||||||||||||  |||||   |||||| | |||||| ||||||||||| | | ||||    
T  10406205 gtgcactcacaacaagctgatgtttgatggtatcaaaccaatagtctcaactacattttcaaatgtttatgcacaattgtaagtttcacaacgaatattc 10406304  T
Q  124 aacaatattgtttcaaccagttgagttaggcccactcatgaagtatgttggcagcatggtgataatgata 193  Q
     | |||| | ||||||||   | | ||||| ||| |||||||||||| ||||||||||||||||||||||    
T  10406305 gagaatactatttcaaccgcattaattaggtccattcatgaagtatgctggcagcatggtgataatgata 10406374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 315 - 456
Target Start/End: Complemental strand, 2522212 - 2522070
Alignment:
Q  315 gactctctttatgtgatgcatttagtgtcaaaggaagtgatgaggcttcaccgctatgcggacctcttgaagctcattcaggtgtatttgtttaagaagt 414  Q
    ||||||||| ||||  ||||||| || ||||||||||||  ||||||||||| || || |  ||||||| | ||||||| | |||||||||| ||| |||    
T  2522212 gactctcttcatgtagtgcattttgtatcaaaggaagtgtcgaggcttcaccactgtgtgatcctcttggaactcattcggatgtatttgttcaaggagt 2522113  T
Q  415 gagatatttccattcatcgtgatttt-ggaaaggaaactcttg 456  Q
    || ||||||||||||||| | ||||| |  |||||||||||||    
T  2522112 gacatatttccattcatcataattttcgtgaaggaaactcttg 2522070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 31 - 271
Target Start/End: Complemental strand, 32925777 - 32925531
Alignment:
Q  31 cactcacaacaagttggtgttgg-tggtatccaactaatagtctcaactacggtttcag---tttattcgcaattgcaagtttcacaatgcacattcaac 126  Q
    ||||||||||||||||||||| | ||||||||||||  | ||||||||||| |||||||   ||||| ||||||||||||||| | |  |  ||||| ||    
T  32925777 cactcacaacaagttggtgtttgatggtatccaactggttgtctcaactacagtttcagctgtttatgcgcaattgcaagttttagagcgggcattcgac 32925678  T
Q  127 aatattgt--ttcaaccagttgagttaggcccactcatgaagtatgttggcagcatggtgataatgataaaacggttctcaatgtggatggaagcatttt 224  Q
    |||| | |  |||||||   | |||||||||||||||||||| |||||||||   || ||||||||||| || |||||| |||||||||||  ||  |||    
T  32925677 aatactatatttcaaccgcattagttaggcccactcatgaagcatgttggcaaagtgatgataatgatacaatggttcttaatgtggatggttgcgcttt 32925578  T
Q  225 aactaatccaggtaaagtagactatggtgaattggttaggagttttg 271  Q
    |||||| |||  |||||||   || |||| ||||||||||| |||||    
T  32925577 aactaacccaaataaagtaagatacggtggattggttaggaattttg 32925531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 66 - 271
Target Start/End: Complemental strand, 34545985 - 34545777
Alignment:
Q  66 aatagtctcaactacggtttcag---tttattcgcaattgcaagtttcacaatgcacattcaacaatattgtttcaaccagttgagttaggcccactcat 162  Q
    |||||||||||||||  ||||||   || || |||||||||||||||| ||    |||||| |||||||| ||||||||     ||||||||||||||||    
T  34545985 aatagtctcaactacaatttcagctgttcatgcgcaattgcaagtttcgcagctgacattcgacaatattatttcaaccgcactagttaggcccactcat 34545886  T
Q  163 gaagtatgttggcagcatggtgataatgataaaacggttctcaatgtggatggaagcattttaactaatccaggtaaagtagactatggtgaattggtta 262  Q
    |||||||   |||| |||||||||||||||  |  |||| |||| || ||||| |||  ||||||||| | |||||||  |   ||||||| ||||||||    
T  34545885 gaagtataccggcaacatggtgataatgattcactggttttcaacgtagatggtagcgctttaactaacctaggtaaaacatgatatggtggattggtta 34545786  T
Q  263 ggagttttg 271  Q
    ||| |||||    
T  34545785 ggaattttg 34545777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 477
Target Start/End: Complemental strand, 32925387 - 32925253
Alignment:
Q  344 aaaggaagtgatgaggcttcaccgctatgcggacctcttgaagctcattcaggtgtatttgtttaagaagtgagatatttccattcatcgtgattttgga 443  Q
    |||| ||||| ||| |||||| ||||||| | |||||||| || |||||| | ||||| || |||||  ||| ||||||| |||||||| |  |||| ||    
T  32925387 aaagaaagtgttgatgcttcatcgctatgtgaacctcttggagttcattcggatgtatgtggttaaggtgtgtgatattttcattcatcatatttttcga 32925288  T
Q  444 -aaggaaactcttgcgcatatgtacttgctaaact 477  Q
     ||| |||||||||||||||| ||||||| |||||    
T  32925287 gaagaaaactcttgcgcatatatacttgcaaaact 32925253  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 477
Target Start/End: Complemental strand, 41942748 - 41942667
Alignment:
Q  397 tgtatttgtttaagaagtgagatatttccattcatcgtgattttgga-aaggaaactcttgcgcatatgtacttgctaaact 477  Q
    |||||||| ||||| |||| |||| |||||||||||||| |||| || || ||||||||||| ||||| || ||| ||||||    
T  41942748 tgtatttggttaaggagtgggatacttccattcatcgtgtttttcgagaatgaaactcttgcacatatatagttgataaact 41942667  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 28681777 - 28681849
Alignment:
Q  119 cattcaacaatattgtttcaaccagttgagttaggcccactcatgaagta-tgttggcagcatggtgataatg 190  Q
    ||||| |||||||||||||||||| || |||||||  || |||||||||| || | |||||| ||||||||||    
T  28681777 cattcgacaatattgtttcaaccactttagttaggatcattcatgaagtattgctagcagcacggtgataatg 28681849  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 38 - 214
Target Start/End: Original strand, 36284272 - 36284455
Alignment:
Q  38 aacaagttggtgttgg-tggtatccaactaatagtctcaactacggtttcag---tttattcgcaattgcaagtttcacaatgcacattcaacaatattg 133  Q
    |||||||||||||| | |||||| ||||| |||||||||| ||||||||||    ||| | | ||||||||||||||| |  | |||||  |||||||||    
T  36284272 aacaagttggtgtttgatggtattcaactgatagtctcaaatacggtttcatctatttttgcacaattgcaagtttcatagcggacatttgacaatattg 36284371  T
Q  134 tttcaaccagttgagttaggcccactcatgaagtatgttggcagcatgg---tgataatgataaaacggttctcaatgtggatg 214  Q
    ||||||||  || ||||||| |||||| ||||||||||||||| |||||   ||||||||||| || |||||| ||| ||||||    
T  36284372 tttcaaccgctttagttaggtccactcgtgaagtatgttggcaacatggtgatgataatgatataatggttcttaatatggatg 36284455  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 316 - 432
Target Start/End: Original strand, 36284640 - 36284756
Alignment:
Q  316 actctctttatgtgatgcatttagtgtcaaaggaagtgatgaggcttcaccgctatgcggacctcttgaagctcattcaggtgtatttgtttaagaagtg 415  Q
    |||||||||||||  || ||||||||||||||||||||  || |||||||| |||||||    ||||| |||| |||    |||||||| ||||| ||||    
T  36284640 actctctttatgtagtgtatttagtgtcaaaggaagtgtcgatgcttcaccactatgcgatattcttggagcttatttgaatgtatttgattaaggagtg 36284739  T
Q  416 agatatttccattcatc 432  Q
    |||||||||||||||||    
T  36284740 agatatttccattcatc 36284756  T

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Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 331 - 458
Target Start/End: Original strand, 8232131 - 8232260
Alignment:
Q  331 tgcatttagtgtcaaaggaagtgatgaggcttcaccgctatgcggacctcttgaagctcattcaggtgtatttgtttaagaagtgagatatttccattca 430  Q
    |||| ||||||| |||||||||   ||||||||| | ||||||| |||||||| ||||||||||| |||||||| ||||| ||||| |||||| ||||||    
T  8232131 tgcaattagtgtaaaaggaagtatcgaggcttcatcactatgcgaacctcttggagctcattcagatgtatttggttaaggagtgaaatattttcattca 8232230  T
Q  431 tcgtgatttt--ggaaaggaaactcttgcg 458  Q
    |||| |||||  |  |||||||||||||||    
T  8232231 tcgttatttttagagaaggaaactcttgcg 8232260  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 147 - 271
Target Start/End: Original strand, 3548881 - 3549005
Alignment:
Q  147 agttaggcccactcatgaagtatgttggcagcatggtgataatgataaaacggttctcaatgtggatggaagcattttaactaatccaggtaaagtagac 246  Q
    |||||||||||||||||||||||||||||| |||||  |||||| || || |||||| ||||| ||||| | | |||||||||| | |||||||| |       
T  3548881 agttaggcccactcatgaagtatgttggcaacatggaaataatggtacaatggttcttaatgtagatggcaacgttttaactaacctaggtaaagcaaga 3548980  T
Q  247 tatggtgaattggttaggagttttg 271  Q
    ||||||| ||||||||||| |||||    
T  3548981 tatggtggattggttaggaattttg 3549005  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 469
Target Start/End: Original strand, 3549131 - 3549292
Alignment:
Q  309 ttttcggactctctttatgtgatgcatttagtgtcaaaggaagtgatgaggcttcaccgctatgcggacctcttgaagctcattcaggtgtatttgttta 408  Q
    ||||| ||||||||| ||||| |||| |||||||| || ||||||  ||| ||||| | ||||||| |||||||  | | ||||| |  |||||||  ||    
T  3549131 ttttctgactctcttcatgtggtgcacttagtgtcgaaagaagtgtcgagacttcatcactatgcgaacctcttagaacacattcggacgtatttggata 3549230  T
Q  409 agaagtgagatatttccattcatcgtgattttgga-aaggaaactcttgcgcatatgtactt 469  Q
    ||||||| |||||||||||||||| |  ||||  | |||||||||||||||||||| |||||    
T  3549231 agaagtgggatatttccattcatcatatttttttagaaggaaactcttgcgcatatctactt 3549292  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 316 - 432
Target Start/End: Original strand, 29371175 - 29371291
Alignment:
Q  316 actctctttatgtgatgcatttagtgtcaaaggaagtgatgaggcttcaccgctatgcggacctcttgaagctcattcaggtgtatttgtttaagaagtg 415  Q
    |||||||||||||  |||||||||||||||| ||||||  ||| ||| | | ||||||  ||  |||||||||||||||  |||||||  ||||| ||||    
T  29371175 actctctttatgtagtgcatttagtgtcaaatgaagtgtcgagactttatcactatgcaaacaacttgaagctcattcaaatgtattttgttaaggagtg 29371274  T
Q  416 agatatttccattcatc 432  Q
    |||||||| ||||||||    
T  29371275 agatattttcattcatc 29371291  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 395
Target Start/End: Complemental strand, 18702769 - 18702678
Alignment:
Q  304 ttgttttttcggactctctttatgtgatgcatttagtgtcaaaggaagtgatgaggcttcaccgctatgcggacctcttgaagctcattcag 395  Q
    |||||| ||| ||||||||| ||||  |||||||||||||||||||||||   |||||||| | ||||||  |||||||| |||||||||||    
T  18702769 ttgtttattctgactctcttcatgtagtgcatttagtgtcaaaggaagtgtcaaggcttcatcactatgcaaacctcttggagctcattcag 18702678  T

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