View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12550_low_4 (Length: 434)
Name: NF12550_low_4
Description: NF12550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12550_low_4 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 16 - 417
Target Start/End: Complemental strand, 42734781 - 42734380
Alignment:
| Q |
16 |
acatcaacaccatcacttatggcagcttcaaaaccagccaaaatatctgcatcataacacgaaccccaacaaaccttataggcggaaactcgtgcttttg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42734781 |
acatcaacaccatcacttatggcagcttcaaaaccagccaaaatatctgcatcataacacgaaccccaacaaaccttataggcggaaactcgtgcttttg |
42734682 |
T |
|
| Q |
116 |
gcgatccaccacttgctgttccatttccatagccaaatacacttgcattagcaacaaaatttcctccagcagttgataaagtatgtgaaccatgacctac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42734681 |
gcgatccaccacttgctgttccatttccatagccaaatacacttgcattagcaacaaaatttcctccagcagttgataaagtatgtgaaccatgacctac |
42734582 |
T |
|
| Q |
216 |
actgtcacgggcactattgaatgtttcatttgggtttctaataggaattggcactgccagatagcctttgtaaaaatatcttgcgccaataagcttccta |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42734581 |
actgtcacgggcactattgaatgtttcatttgggtttctaataggaattggcactgccatatagcctttgtaaaaatatcttgcgccaataagcttccta |
42734482 |
T |
|
| Q |
316 |
caaggatgtaattaaaattcaaaacaggagcatatagaaaaatatcaaagacaattaaattggttttattatgtattataatccaaatcatggtgatata |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42734481 |
caaggatgtaattaaaattcaaaacaggagcatatagaaaaatatcaaagacaattaaattggttttattatgtattataatccaaatcatggtgatata |
42734382 |
T |
|
| Q |
416 |
ct |
417 |
Q |
| |
|
|| |
|
|
| T |
42734381 |
ct |
42734380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 22 - 365
Target Start/End: Original strand, 42743735 - 42744081
Alignment:
| Q |
22 |
acaccatcacttatggcagcttcaaaaccagccaaaatatctgcatcataaca-cgaac--cccaacaaaccttataggcggaaactcgtgcttttggcg |
118 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| | ||| | | | ||||||||||||||||||| | ||||||||||||||| | |
|
|
| T |
42743735 |
acaccatcacttattgcagcttcaaaaccagccaaaatatctgcatcttgacatccatcgtcccaacaaaccttataggctgcaactcgtgcttttggtg |
42743834 |
T |
|
| Q |
119 |
atccaccacttgctgttccatttccatagccaaatacacttgcattagcaacaaaatttcctccagcagttgataaagtatgtgaaccatgacctacact |
218 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
42743835 |
atccaccacttgctgttccatttccattgccaaatacacttgcattggcaacgaaatttcctccagcagttgataaagtatgtgaaccatgaccttcaaa |
42743934 |
T |
|
| Q |
219 |
gtcacgggcactattgaatgtttcatttgggtttctaataggaattggcactgccagatagcctttgtaaaaatatcttgcgccaataagcttcctacaa |
318 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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|
| T |
42743935 |
gtcacgtgcactattgaatgtttcatttgggtttctaataggaattggcactgccagatagcctttgttaaaatatcttgctccaataagcttcctacaa |
42744034 |
T |
|
| Q |
319 |
ggatgtaattaaaattcaaaacaggagcatatagaaaaatatcaaag |
365 |
Q |
| |
|
|||||||| |||||||||| | |||||||||||| ||||| |||| |
|
|
| T |
42744035 |
agatgtaataaaaattcaaagtatgagcatatagaataatataaaag |
42744081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 22 - 365
Target Start/End: Original strand, 42753094 - 42753440
Alignment:
| Q |
22 |
acaccatcacttatggcagcttcaaaaccagccaaaatatctgcatcataaca-cgaac--cccaacaaaccttataggcggaaactcgtgcttttggcg |
118 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| | ||| | | | ||||||||||||||||||| | ||||||||||||||| | |
|
|
| T |
42753094 |
acaccatcacttattgcagcttcaaaaccagccaaaatatctgcatcttgacatccatcgtcccaacaaaccttataggctgcaactcgtgcttttggtg |
42753193 |
T |
|
| Q |
119 |
atccaccacttgctgttccatttccatagccaaatacacttgcattagcaacaaaatttcctccagcagttgataaagtatgtgaaccatgacctacact |
218 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
42753194 |
atccaccacttgctgttccatttccattgccaaatacacttgcattggcaacgaaatttcctccagcagttgataaagtatgtgaaccatgaccttcaaa |
42753293 |
T |
|
| Q |
219 |
gtcacgggcactattgaatgtttcatttgggtttctaataggaattggcactgccagatagcctttgtaaaaatatcttgcgccaataagcttcctacaa |
318 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
42753294 |
gtcacgtgcactattgaatgtttcatttgggtttctaataggaattggcactgccagatagcctttgttaaaatatcttgctccaataagcttcctacaa |
42753393 |
T |
|
| Q |
319 |
ggatgtaattaaaattcaaaacaggagcatatagaaaaatatcaaag |
365 |
Q |
| |
|
|||||||| |||||||||| | |||||||||||| ||||| |||| |
|
|
| T |
42753394 |
agatgtaataaaaattcaaagtatgagcatatagaataatataaaag |
42753440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 417
Target Start/End: Original strand, 42762713 - 42763107
Alignment:
| Q |
16 |
acatcaacaccatcacttatggcagcttcaaaaccagccaaaatatctgcatcataacacgaaccccaacaaaccttataggcggaaactcgtgcttttg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||| | |||||||||||||| |
|
|
| T |
42762713 |
acatcaacaccatcacttatggcagcttcaaaaccagccaaaatgtctgcatcataacatccatcccaacaaaccttataggctgcaactcgtgcttttg |
42762812 |
T |
|
| Q |
116 |
gcgatccaccacttgctgttccatttccatagccaaatacacttgcattagcaacaaaatttcctccagcagttgataaagtatgtgaaccatgacctac |
215 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
42762813 |
gtgatccaccacttgctgttccatttccattgccaaatacacttgcattagcaacgaaatttcctccagcagttgataaagtgtgtgaaccatgaccttc |
42762912 |
T |
|
| Q |
216 |
actgtcacgggcactattgaatgtttcatttgggtttctaataggaattggcactgccagatagcctttgtaaaaatatcttgcgccaataagcttccta |
315 |
Q |
| |
|
||| || || ||||||| | | | ||||| | |||| |||| | ||||||| ||||||| ||||||||||||| ||||||||||| ||| |
|
|
| T |
42762913 |
actatcccgtgcactatgaagcgatacatttttggctctataaggatt------tgccagaaagcctttaaaaaaatatcttgctccaataagctttcta |
42763006 |
T |
|
| Q |
316 |
caaggatgtaattaaaattcaaaacaggagcatatagaaaaatatcaaagacaattaaattggttttattatgtattataatccaaatcatggtgatata |
415 |
Q |
| |
|
||| ||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42763007 |
caaaattgtaa-taaaattcaaaataggagcatatagaaatatatcaaagacaattaaattggttttattatgtattataatccaaatcatggttatata |
42763105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 22 - 238
Target Start/End: Original strand, 42717110 - 42717326
Alignment:
| Q |
22 |
acaccatcacttatggcagcttcaaaaccagccaaaatatctgcatcataacacgaaccccaacaaaccttataggcggaaactcgtgcttttggcgatc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42717110 |
acaccatcacttatggcagcttcaaaaccagccaaaatatctgcatcataacatgaatcccaacaaaccttataggctacaactcgtgcttttggcgatc |
42717209 |
T |
|
| Q |
122 |
caccacttgctgttccatttccatagccaaatacacttgcattagcaacaaaatttcctccagcagttgataaagtatgtgaaccatgacctacactgtc |
221 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| || |||| |
|
|
| T |
42717210 |
caccacttgctgttccattgccatagccaaatacacttgcattagcaacaaaatttcctccggcagttgataaagtatgtgtaccatgaccatcaatgtc |
42717309 |
T |
|
| Q |
222 |
acgggcactattgaatg |
238 |
Q |
| |
|
||| |||||||| |||| |
|
|
| T |
42717310 |
acgtgcactattaaatg |
42717326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 81 - 315
Target Start/End: Original strand, 42769667 - 42769895
Alignment:
| Q |
81 |
ccaacaaaccttataggcggaaactcgtgcttttggcgatccaccacttgctgttccatttccatagccaaatacacttgcattagcaacaaaatttcct |
180 |
Q |
| |
|
|||||| ||||||||||| | ||||||||| || || |||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
42769667 |
ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcct |
42769766 |
T |
|
| Q |
181 |
ccagcagttgataaagtatgtgaaccatgacctacactgtcacgggcactattgaatgtttcatttgggtttctaataggaattggcactgccagatagc |
280 |
Q |
| |
|
|| || |||||||||||||||||||||||||| || ||| || ||||||| ||||||| |||||| | | || || | |||||| ||||| |
|
|
| T |
42769767 |
cccgcggttgataaagtatgtgaaccatgaccatcaaagtcgcgtgcactatggaatgttacatttgtggatttaccagca------tctgccaaatagc |
42769860 |
T |
|
| Q |
281 |
ctttgtaaaaatatcttgcgccaataagcttccta |
315 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
42769861 |
ctttgtaaaaatatcttgctccaattagcttccta |
42769895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 315
Target Start/End: Original strand, 42717371 - 42717406
Alignment:
| Q |
280 |
cctttgtaaaaatatcttgcgccaataagcttccta |
315 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42717371 |
cctttgtaaaaatatcttgctccaataagcttccta |
42717406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 42769584 - 42769639
Alignment:
| Q |
16 |
acatcaacaccatcacttatggcagcttcaaaaccagccaaaatatctgcatcata |
71 |
Q |
| |
|
||||||||||| ||| |||||||||||| |||||||||||||| ||||| ||||| |
|
|
| T |
42769584 |
acatcaacaccgtcaagtatggcagcttcgaaaccagccaaaatgtctgcttcata |
42769639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 338
Target Start/End: Complemental strand, 23040745 - 23040420
Alignment:
| Q |
16 |
acatcaacaccatcacttatggcagcttcaaaaccagccaaaatatctgcatcataacacgaa---ccccaacaaaccttataggcggaaactcgtgctt |
112 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| || ||||| |||||||||||||| | |||||| |||| |
|
|
| T |
23040745 |
acatcaacaccatcacttattgcagcttcaaaaccagccaaaatatctgcatcatgacataaatccccccagcaaaccttataggctgcaactcgagctt |
23040646 |
T |
|
| Q |
113 |
ttggcgatccaccacttgctgttccatttccatagccaaatacacttgcattagcaacaaaatttcctccagcagttgataaagtatgtgaaccatgacc |
212 |
Q |
| |
|
|||| |||||||||||||||||||| |||| |||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23040645 |
ttggtgatccaccacttgctgttcctcggccattgccaaatacactcgcattagcaacgaaatttcctccaacagttgataaagtatgtgaaccatgacc |
23040546 |
T |
|
| Q |
213 |
tacactgtcacgggcactattgaatgtttcatttgggtttctaataggaattggcactgccagatagcctttgtaaaaatatcttgcgccaataagcttc |
312 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
23040545 |
atcaaagtcacgtgcactattgaatgtttcatttgggtctctaataggaattggcattgccagatagcctttgttaaaatatcttgctccaataagcttc |
23040446 |
T |
|
| Q |
313 |
ctacaaggatgtaattaaaattcaaa |
338 |
Q |
| |
|
|||||| |||||||| |||||||||| |
|
|
| T |
23040445 |
ctacaaagatgtaataaaaattcaaa |
23040420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 42313964 - 42313912
Alignment:
| Q |
16 |
acatcaacaccatcacttatggcagcttcaaaaccagccaaaatatctgcatc |
68 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| || | ||||||||| |
|
|
| T |
42313964 |
acatcaacaccgtcacttatggcagcttcaaaaccagctaagacatctgcatc |
42313912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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