View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12550_low_6 (Length: 418)
Name: NF12550_low_6
Description: NF12550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12550_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 405
Target Start/End: Complemental strand, 49653957 - 49653578
Alignment:
| Q |
11 |
cacagacactgtcactgaccgcatttaaaaaatagaagtagtatttcaatttaatcacatgtatgtgttgtgttggtgtttaacacggacaccaacacat |
110 |
Q |
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| T |
49653957 |
cacaaacactgtcactgaccgcatttaaaaaata--agtagtatttcaatttaatcacatgtatgtgttgtgtcgg----------------------at |
49653882 |
T |
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| Q |
111 |
gtgagacattaacatgtgttggacaccatacacgtcttca------ggtgtcgagggttacattgtacttattagagcaccagccaccaaaccatacagt |
204 |
Q |
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| T |
49653881 |
gtgagacactaacacgtgttggacaccatacacgtcttcaatctaaggtgtcgagtgctacattgtacttattagagcaccagccaccaaaccatacagt |
49653782 |
T |
|
| Q |
205 |
gttttagtggtaagaaaagggtaaatggaaatgacagtgattttgggtttagcaaagtaaga---tttaagacttgtaatctttccatgcatgaaatgaa |
301 |
Q |
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| T |
49653781 |
gttttagtggtaagaaaagggtaaatggaaatgacagtgattttgggtttagcaaagtaagaagatttaagacttgtaatctttccatgcatgaaatgaa |
49653682 |
T |
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| Q |
302 |
aaagaactgaatagttgaaaacttaagttagtttgatttataagctcagtaccatcaatgctctgaagaactttctttactttcctcctacaaccttcac |
401 |
Q |
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| T |
49653681 |
aaagaactgaatagttgaaaacttaagttagtttgatttataagctcagtaccatcaatgctctgaagaactttctttactttcctcctacaaccttcac |
49653582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 405
Target Start/End: Original strand, 14382068 - 14382124
Alignment:
| Q |
349 |
agtaccatcaatgctctgaagaactttctttactttcctcctacaaccttcacagtg |
405 |
Q |
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| T |
14382068 |
agtaccatcaatgcgctttaaaactttctttactttctttctgcaaccttcacagtg |
14382124 |
T |
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