View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12550_low_7 (Length: 325)
Name: NF12550_low_7
Description: NF12550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12550_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 7 - 155
Target Start/End: Original strand, 40114229 - 40114377
Alignment:
| Q |
7 |
agaagcataggtaggtttaaagtagaagatgtagtgggcagattattacctgatgaagaacttgagtgcaaggttgcctcttgaggatttgcaacagatg |
106 |
Q |
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| T |
40114229 |
agaatcataggtaggtttgaagtagaagatgtagtgggcagattattacctgatgaagaacttgagtgcaaggttgcctcttgaggatttgcaacagatg |
40114328 |
T |
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| Q |
107 |
tagaggtagtggtggtcgcagtttgtgaagtattagttgtaagtggtgg |
155 |
Q |
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| T |
40114329 |
tagaggtagtggtggtcacagtttgtgaagtattagttgtaagtggtgg |
40114377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 193 - 325
Target Start/End: Original strand, 40114373 - 40114505
Alignment:
| Q |
193 |
ggtgggttaagaggtaggatgatgtgtggtggatgtgggttgatgcttggtattggtttgtagataggtgtcggttgtattaaggatgggtagggaaaat |
292 |
Q |
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| T |
40114373 |
ggtggtttaagaggtaggatgatgtgtggtggatgtgggttgatgcttggtattggtttgtagataggtgtcagttgtattaaggatgggtagggaaaat |
40114472 |
T |
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| Q |
293 |
ggttgtcatagaagaccacatgacgggatgtgt |
325 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
40114473 |
ggttgtcatagaagaccacatgacgggatgtgt |
40114505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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