View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12550_low_9 (Length: 252)
Name: NF12550_low_9
Description: NF12550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12550_low_9 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr6 (6 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0585 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 32705939 - 32705702
Alignment:
| Q |
13 |
caaaggcaaaactgaacaataaccaccataatgccaacgtgattaatcatgttattggcctttttgagatgagaacatgaatcagcaccttgggctaatt |
112 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32705939 |
caaaagcaaaactgaacagtaaccaccataatgccaacgtgattaatcatgttattggcctttttgagatgagaacatgaatcagcaccttgggctaatt |
32705840 |
T |
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| Q |
113 |
acatctccatgagataatcactaacttgcaacctgctgtcaattattttattaaaaccataacagtactaataattgaccatttgta-taatagccaaat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
32705839 |
acatctccatgagataatcactaacttgcaacctgctgccaattattttattaaaaccataacagtactaataattgaccatttggattaatagccaaat |
32705740 |
T |
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| Q |
212 |
tattttactagaaaaataacatgcttgtttggaattaa |
249 |
Q |
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||||||||||| |||||||||||||||||||||||||| |
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| T |
32705739 |
tattttactaggaaaataacatgcttgtttggaattaa |
32705702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 23144661 - 23144901
Alignment:
| Q |
15 |
aaggcaaaactgaacaataaccaccataatgccaacgtgattaatcatgttattggcctttttgagatgagaacatgaatcagcaccttgggctaattac |
114 |
Q |
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|||||||||||||||| |||| || |||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||| ||||| |
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| T |
23144661 |
aaggcaaaactgaacagtaactactataatgccaatgtgattaatcattttattggcctttttgagccgagaacatgaatcagcaccttgagctgattac |
23144760 |
T |
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| Q |
115 |
atctccatgagataatcactaacttgcaacctgctgtcaattattttattaaaaccataacagtactaataattgaccattt-gtataatagccaa--at |
211 |
Q |
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|||| ||||||||||||||||||| |||| || || |||||||||||||||||||||||| ||||||||||||||||||| || |||||||||| || |
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| T |
23144761 |
atcttcatgagataatcactaactcacaacttgttgcaaattattttattaaaaccataacaatactaataattgaccatttggtttaatagccaaatat |
23144860 |
T |
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| Q |
212 |
tattttactagaaaaataacatgcttgtttggaattaaaaa |
252 |
Q |
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||||||||||| |||||| |||||||||||||||||||||| |
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| T |
23144861 |
tattttactaggaaaatagcatgcttgtttggaattaaaaa |
23144901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 84 - 252
Target Start/End: Original strand, 2309831 - 2310000
Alignment:
| Q |
84 |
agaacatgaatcagcaccttgggctaattacatctccatgagataatcactaacttgcaacctgctgtcaattattttattaaaaccataacagtactaa |
183 |
Q |
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||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||| |||||||||||| |||| |
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| T |
2309831 |
agaacatgaatcagcactttgggataattacatctccatgagataatcacttactcacaacctgctgccaattattttattagaaccataacagtgctaa |
2309930 |
T |
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| Q |
184 |
taattgaccatttgta-taatagccaaattattttactagaaaaataacatgcttgtttggaattaaaaa |
252 |
Q |
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|||||||||||||| | ||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
2309931 |
taattgaccatttggattaatagccaaattattttactaggaaaatagcatgcttgtttggaattaaaaa |
2310000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 84 - 252
Target Start/End: Original strand, 20420168 - 20420337
Alignment:
| Q |
84 |
agaacatgaatcagcaccttgggctaattacatctccatgagataatcactaacttgcaacctgctgtcaattattttattaaaaccataacagtactaa |
183 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||| |||| ||||| |||||||||||||| ||||||||| || |||| |
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| T |
20420168 |
agaacatgaatcagcaccttgggataattacatctccatgaaataatcacttactcacaacttgctgccaattattttattagaaccataactgtgctaa |
20420267 |
T |
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| Q |
184 |
taattgaccatttgta-taatagccaaattattttactagaaaaataacatgcttgtttggaattaaaaa |
252 |
Q |
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|||||||||||||| | ||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
20420268 |
taattgaccatttggattaatagccaaattattttactaggaaaatagcatgcttgtttggaattaaaaa |
20420337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 146 - 252
Target Start/End: Original strand, 20415665 - 20415772
Alignment:
| Q |
146 |
tgctgtcaattattttattaaaaccataacagtactaataattgaccatttgtat-aatagccaaattattttactagaaaaataacatgcttgtttgga |
244 |
Q |
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||||| |||||||||||||| ||||||||| || |||||||||||||||||| || |||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
20415665 |
tgctgccaattattttattagaaccataactgtgctaataattgaccatttggattaatagccaaattattttactaggaaaatagcatgcttgtttgga |
20415764 |
T |
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| Q |
245 |
attaaaaa |
252 |
Q |
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|||||||| |
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| T |
20415765 |
attaaaaa |
20415772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 30518932 - 30519011
Alignment:
| Q |
173 |
aacagtactaataattgaccatttgtataatagccaaattattttactagaaaaataacatgcttgtttggaattaaaaa |
252 |
Q |
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|
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30518932 |
aacagtactaataattgaccattcgtataatagccaaattattttactaggaaaataacatgcttgtttggaattaaaaa |
30519011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 30518866 - 30518932
Alignment:
| Q |
13 |
caaaggcaaaactgaacaataaccaccataatgccaacgtgattaatcatgttattggcctttttga |
79 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30518866 |
caaaggcaaaactgaacaataaccaccataatgccaacgtgattaatcatgttattggcatttttga |
30518932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 20417445 - 20417372
Alignment:
| Q |
180 |
ctaataattgaccatttgtat-aatagccaaattattttactagaaaaataacatgcttgtttggaattaaaaa |
252 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
20417445 |
ctaataattgaccatttggattaatagccaaattattttactaggaaaatagcatgcttgtttggaattaaaaa |
20417372 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 20415435 - 20415510
Alignment:
| Q |
84 |
agaacatgaatcagcaccttgggctaattacatctccatgagataatcactaacttgcaacctgctgtcaattatt |
159 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||| |||| ||||| |||||||| |
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| T |
20415435 |
agaacatgaatcagcaccttgggataattacatctccatgaaataatcacttactcacaacttgctgccaattatt |
20415510 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 6050871 - 6050950
Alignment:
| Q |
173 |
aacagtactaataattgaccatttgtataatagccaaattattttactagaaaaataacatgcttgtttggaattaaaaa |
252 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6050871 |
aacagtactaataattgaccatttgtctaatagccaaattattttactaggaaaataacatgcttgtttggaattaaaaa |
6050950 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 6050805 - 6050871
Alignment:
| Q |
13 |
caaaggcaaaactgaacaataaccaccataatgccaacgtgattaatcatgttattggcctttttga |
79 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6050805 |
caaaggcaaaactgaacaatagccaccataatgccaacgtgattaatcatgttattggcatttttga |
6050871 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0585 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0585
Description:
Target: scaffold0585; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 1455 - 1522
Alignment:
| Q |
185 |
aattgaccatttgtataatagccaaattattttactagaaaaataacatgcttgtttggaattaaaaa |
252 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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|
| T |
1455 |
aattgaccattggattaatagccaaattattttactaggaaaatagcatgcttgtttggaattaaaaa |
1522 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0585; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 3864 - 3931
Alignment:
| Q |
185 |
aattgaccatttgtataatagccaaattattttactagaaaaataacatgcttgtttggaattaaaaa |
252 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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|
| T |
3864 |
aattgaccattggattaatagccaaattattttactaggaaaatagcatgcttgtttggaattaaaaa |
3931 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 20265026 - 20265078
Alignment:
| Q |
200 |
taatagccaaattattttactagaaaaataacatgcttgtttggaattaaaaa |
252 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
20265026 |
taatagccaaattattttactaggaaaataacatgtttgtttggaattaaaaa |
20265078 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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