View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12551_high_1 (Length: 807)
Name: NF12551_high_1
Description: NF12551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12551_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 350 - 789
Target Start/End: Complemental strand, 38212274 - 38211841
Alignment:
| Q |
350 |
tcacaaaggttccgcccttgcttggggatgatcggtcaacgtgagccatgtgtttttgggcttttctctgg-gctctttatacgcatgtcaagggttcat |
448 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38212274 |
tcacaaaggttccgcccttgcttggggatgatcggtcaacgtgagccatgtgtttttgggcttttctctggtgctctttatacgcatgtcaagggttcat |
38212175 |
T |
|
| Q |
449 |
gggccaaatggaccttttggggccgctaggtattacgtaggcctttgataacctgatattatttgtgcatgttcgaaggcaaggagcaacgcaattgaaa |
548 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||| |||||||||| |
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| T |
38212174 |
gggccaaatggaccttttgaggccgctaggtattacgtaggcctttgataacc--atattagttgtgcatgttcgaagg-----agcaatgcaattgaaa |
38212082 |
T |
|
| Q |
549 |
aattacttcaaccaccgtaattttgtgaagcgacaaagtgtaacatttgttgaagttatgataacttactatgattttatccaactcatggttcactcaa |
648 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
38212081 |
aattacttcaaccaccgtaattttgtgaagctacaaagtgtaacatttgttaaaattatgataacttactatgattttatccatctcacggttcactcaa |
38211982 |
T |
|
| Q |
649 |
atataaatatggacgaagacggtcttcttcaaccagggatacgtgacatgatgatagtcaagataccccttgtcagtctggttagatgcttgtcattttc |
748 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
38211981 |
atataaatatggacgaagacggtctttttcaaccagggatacgtgacatgatgatagtcaaaataccccttgtcagtctggttagatgctagtcattttc |
38211882 |
T |
|
| Q |
749 |
aggcttgttctccaaatattgtttgattttgttgtgagttg |
789 |
Q |
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| T |
38211881 |
aggcttgttctccaaatattgtttgattttgttgtgagttg |
38211841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 350
Target Start/End: Complemental strand, 38212646 - 38212307
Alignment:
| Q |
8 |
gagcacagatggttgtaactattgatctttgtactttgtttatgggcgaggacattacaaacatgattctatgtcttcggaccgcctggggacagcagca |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38212646 |
gagcacagatggttgtaactattgatctttgtactttgtttatggccgaggacattacaaacatgattctatgtcttcagaccgcctggggacagcagca |
38212547 |
T |
|
| Q |
108 |
atgctagagtaaatgtcacgagggtggcaaatataaagagtttttaaaatacttatatattaaacttgagagttgaatatannnnnnnagctctatacaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38212546 |
atgctagagtaaatgtcacgagggtggcaaatat--agagtttttaaaatacttatatattaaacttgagagttgaatata-tttttcagctctatacaa |
38212450 |
T |
|
| Q |
208 |
ttatatttctcaatagctattgaagatattgaaagtgtcaaaacaatacgaataaattttggtaaatagatttgtttgacgtggctaaactattttattg |
307 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| |||||||||| |
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| T |
38212449 |
ttatatttctcaatagctgttgaagatattgaaagtgtcaaaacaatacaaataaattttgataaatagatttctttgacgtggctaaaatattttattg |
38212350 |
T |
|
| Q |
308 |
gagtagcttaaaataaaatgtactcaaatcattcaagataaat |
350 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38212349 |
gagtagcttaaaataaaatgtactcaaatcattcaagataaat |
38212307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 264 - 350
Target Start/End: Original strand, 22156933 - 22157013
Alignment:
| Q |
264 |
ttttggtaaatagatttgtttgacgtggctaaactattttattggagtagcttaaaataaaatgtactcaaatcattcaagataaat |
350 |
Q |
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||||||||||||||||||||||| || | ||| ||||||| ||| |||||||||||||||| | |||||||||||||||||| |
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| T |
22156933 |
ttttggtaaatagatttgtttgaggt------aatatattattggggtatcttaaaataaaatgtattaaaatcattcaagataaat |
22157013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 110 - 266
Target Start/End: Original strand, 52375098 - 52375253
Alignment:
| Q |
110 |
gctagagtaaatgtcacgagggtggcaaatataaagagtttttaaaatacttatatattaaacttgagagttgaatatannnnnnnagctctatacaatt |
209 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||| | ||| |||| ||||||| ||||||| ||||||||||||| | |||||||||||| |
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| T |
52375098 |
gctagagtaaatgtcacgaggaggtcaaatataaagattgttttaaatgtttatataataaactttagagttgaatata-tttttaatctctatacaatt |
52375196 |
T |
|
| Q |
210 |
atatttctcaatagctattgaagatattgaaagtgtcaaaacaatacgaataaattt |
266 |
Q |
| |
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||||||||| |||| |||| |||| |||||||||| |||| || |||||||||||| |
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|
| T |
52375197 |
atatttctctatagttattaaagagattgaaagtgacaaagtaaaacgaataaattt |
52375253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 264 - 350
Target Start/End: Original strand, 40431810 - 40431897
Alignment:
| Q |
264 |
ttttggtaaatagatttgtttgacgtggctaaac-tattttattggagtagcttaaaataaaatgtactcaaatcattcaagataaat |
350 |
Q |
| |
|
||||| ||||||||||||||| | |||||||| ||| |||||| ||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
40431810 |
ttttgataaatagatttgtttaagatggctaaaaatatattattgaagtagcttaaaataaaatgcactcaaatcatttaagataaat |
40431897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 198 - 266
Target Start/End: Original strand, 40431698 - 40431766
Alignment:
| Q |
198 |
ctctatacaattatatttctcaatagctattgaagatattgaaagtgtcaaaacaatacgaataaattt |
266 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| ||||||| ||||||| || ||||||| |||| |
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| T |
40431698 |
ctctatacaattatatttctctatagctattgaagagattgaaacggtcaaaataagacgaatacattt |
40431766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 26684066 - 26684106
Alignment:
| Q |
310 |
gtagcttaaaataaaatgtactcaaatcattcaagataaat |
350 |
Q |
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|
||||||||||||||||||||||||||||||| || |||||| |
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| T |
26684066 |
gtagcttaaaataaaatgtactcaaatcatttaatataaat |
26684106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 26953794 - 26953834
Alignment:
| Q |
310 |
gtagcttaaaataaaatgtactcaaatcattcaagataaat |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||| |
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|
| T |
26953794 |
gtagcttaaaataaaatgtactcaaatcatttaatataaat |
26953834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 350
Target Start/End: Complemental strand, 27839528 - 27839495
Alignment:
| Q |
317 |
aaaataaaatgtactcaaatcattcaagataaat |
350 |
Q |
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||||||||||||||| |||||||||||||||||| |
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| T |
27839528 |
aaaataaaatgtacttaaatcattcaagataaat |
27839495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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