View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12551_high_18 (Length: 356)
Name: NF12551_high_18
Description: NF12551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12551_high_18 |
 | |
|
| [»] scaffold0279 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 34849411 - 34849254
Alignment:
| Q |
44 |
gattaagatggaatactaaatatggattatgagttttcatccaaaatgacaaaaatttaaccttaccgaccagttcaaccatcatttcaaccaaacagcg |
143 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||| ||||| |
|
|
| T |
34849411 |
gattaagatcgaatactaaatatggattatgagttttcatccaaaatgacaaaaatttaaccttaccgaccagttgaaccatcatttctatcaagcagcg |
34849312 |
T |
|
| Q |
144 |
atcattcattcctttcattccacatcattcaaatacaggcaaactatataatgtgcata |
202 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34849311 |
at-attcatccctttcattccacatcattcaaacacaggcaaactatataatgtgcata |
34849254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 244 - 322
Target Start/End: Complemental strand, 27528468 - 27528390
Alignment:
| Q |
244 |
ccatgattttcagaaaactagataaatcaggtggatacgtgaaagagattcgttcttttccatcactttgacatatatg |
322 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||| | | |||||||||||||||||||||||||||||| |
|
|
| T |
27528468 |
ccatgattttcagaaaattagataaataaggtggatacgtgaaatatactcgttcttttccatcactttgacatatatg |
27528390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 318
Target Start/End: Complemental strand, 47494356 - 47494280
Alignment:
| Q |
244 |
ccatgattttcagaaaactagataaat--caggtggatacgtgaaagagattcgttcttttccatcactttgacata |
318 |
Q |
| |
|
||||||| || |||||| ||||||||| |||||||||||||||||| |||| |||||||||||||||| |||||| |
|
|
| T |
47494356 |
ccatgatatttagaaaagtagataaatatcaggtggatacgtgaaagctattcattcttttccatcacttagacata |
47494280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 203 - 322
Target Start/End: Complemental strand, 498736 - 498617
Alignment:
| Q |
203 |
ataggagattttatcttttgtgaagagatccannnnnnnnnccatgattttcagaaaactagataaatcaggtggatacgtgaaagagattcgttctttt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
498736 |
ataggagattttatcttttgtgaagagatccatttttttttccatgattttcagaaaactagataaatcaggtggatacgtgaaagagattcgttctttt |
498637 |
T |
|
| Q |
303 |
ccatcactttgacatatatg |
322 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
498636 |
ccatcactttgacatatatg |
498617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 203 - 322
Target Start/End: Original strand, 615574 - 615693
Alignment:
| Q |
203 |
ataggagattttatcttttgtgaagagatccannnnnnnnnccatgattttcagaaaactagataaatcaggtggatacgtgaaagagattcgttctttt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
615574 |
ataggagattttatcttttgtgaagagatccatttttttttccatgattttcagaaaactagataaatcaggtggatacgtgaaagagattcgttctttt |
615673 |
T |
|
| Q |
303 |
ccatcactttgacatatatg |
322 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
615674 |
ccatcactttgatatatatg |
615693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0279 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0279
Description:
Target: scaffold0279; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 244 - 322
Target Start/End: Complemental strand, 22349 - 22271
Alignment:
| Q |
244 |
ccatgattttcagaaaactagataaatcaggtggatacgtgaaagagattcgttcttttccatcactttgacatatatg |
322 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||| | | |||||||||||||||||||||||||||||| |
|
|
| T |
22349 |
ccatgattttcagaaaattagataaataaggtggatacgtgaaatatactcgttcttttccatcactttgacatatatg |
22271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 17211970 - 17211898
Alignment:
| Q |
250 |
ttttcagaaaactagataaatcaggtggatacgtgaaagagattcgttcttttccatcactttgacatatatg |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||| || |||||| |
|
|
| T |
17211970 |
ttttcagaaaactagataaatcaggtggatacgtgaaatatattcgttattttccatcactttaacgtatatg |
17211898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 322
Target Start/End: Complemental strand, 9551834 - 9551757
Alignment:
| Q |
246 |
atgattttcagaaaactagataaa-tcaggtggatacgtgaaagagattcgttcttttccatcactttgacatatatg |
322 |
Q |
| |
|
|||||||| | ||||||||| ||| |||| ||||| | ||||||| | | |||||||| ||||||||||||||||||| |
|
|
| T |
9551834 |
atgattttaaaaaaactagacaaaatcagatggatgcatgaaagatactggttcttttacatcactttgacatatatg |
9551757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University