View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12551_high_19 (Length: 354)
Name: NF12551_high_19
Description: NF12551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12551_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 179 - 338
Target Start/End: Complemental strand, 51731648 - 51731489
Alignment:
| Q |
179 |
atcaataccaaaagaatcatgtctatgaaccgtgaaaataaccatccaaaaatagcatcaaaaataggcataataggaggtggagtaagtggcatagcaa |
278 |
Q |
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| T |
51731648 |
atcaataccaaaagaatcatgtctatgaaccgtgaaaataaccatccaaaaataatatcaaaaataggcataataggaggtggagtaagtggcatagcaa |
51731549 |
T |
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| Q |
279 |
ttgcaaaacaactattacaccacaatcctattatatttgaagccactgactccattggtg |
338 |
Q |
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| T |
51731548 |
ttgcaaaacagctattacaccacaatcctattgtatttgaagccactgactccattggtg |
51731489 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 338
Target Start/End: Complemental strand, 19192341 - 19192284
Alignment:
| Q |
281 |
gcaaaacaactattacaccacaatcctattatatttgaagccactgactccattggtg |
338 |
Q |
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| T |
19192341 |
gcaaaacaactatcacactacaaccctattgtttttgaagccactaactccattggtg |
19192284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 338
Target Start/End: Original strand, 19054431 - 19054510
Alignment:
| Q |
259 |
tggagtaagtggcatagcaattgcaaaacaactattacaccacaatcctattatatttgaagccactgactccattggtg |
338 |
Q |
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| T |
19054431 |
tggagttagtggcttagccgtagcaaaacaactatcacactacaaccctattgtttttgaagccactgattcaattggtg |
19054510 |
T |
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