View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12551_high_20 (Length: 349)
Name: NF12551_high_20
Description: NF12551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12551_high_20 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 13 - 349
Target Start/End: Original strand, 31045049 - 31045385
Alignment:
| Q |
13 |
atgaactataagcaaagagctcagataaagaccataaacagtgtgacatgaatcatcacatgcaaggtatgcagcagtgtatgtaaaggaaaagttgctc |
112 |
Q |
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| T |
31045049 |
atgaactataagcaaagagctcagataaagaccataaacagtctgacatgaatcatctcatgcaaggtattcagcagtgtatgtaaaggaaaagttgcta |
31045148 |
T |
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| Q |
113 |
ttctcctaaagcctcaccaaacgaagtttgcggcatataacaagtcttcatcttcacattaaaaactttttgtatatgtaaattaagattcaaaatttaa |
212 |
Q |
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| T |
31045149 |
ttctcctaaagcctcaccaaacgaagcttgcggcatataacaagtcttcatcttcacattaaaaactttttgtatatgtaaattaagattcaaaatttaa |
31045248 |
T |
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| Q |
213 |
actcatgcaaacatgttcatatagccctctctttctctaaaattccattgaattatgagtacatattttatccgtatccaattgtcacaacatacattta |
312 |
Q |
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| T |
31045249 |
actcatgcaaacatgttcatataaccctctctttctctaaaattccattgaattatgagtacatattttatccgtatccaattgtcacaacatacattta |
31045348 |
T |
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| Q |
313 |
atttaactctagacttctacaacttcatctatcctct |
349 |
Q |
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| T |
31045349 |
atttaactctagacttctacaacttcatctatcctct |
31045385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 13 - 331
Target Start/End: Complemental strand, 172338 - 172005
Alignment:
| Q |
13 |
atgaactataagcaaagagctcagataaagaccataaaca--gtgtgacatgaatcatcacatgcaa--ggtatgca---gcagtgtatgta-aaggaaa |
104 |
Q |
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||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| || ||| || | | | || | || ||||||| |
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| T |
172338 |
atgaattataagcaaatagctcagataaagaccataaacaaagtgtgacatgaatcatcacatgaaacgggtgtgtaaaggaaacgtttctagaaggaaa |
172239 |
T |
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| Q |
105 |
a-gttgctcttctcctaaagcctcaccaaacgaagtttgc------ggcatataacaagtcttcatcttcacattaaaaactttttgtatatgtaaatta |
197 |
Q |
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| T |
172238 |
atgttgctcttctcttaaagccacaccaaacgaagcttgattagaagatatataacaggtcttcatcttcacattaaaaacattttgtatatgtaaatta |
172139 |
T |
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| Q |
198 |
agattcaaaatttaaactcatgcaaacatgttcatatagccctctctttctctaaaattccattgaattatgagtacatattttatccgtatccaattgt |
297 |
Q |
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| T |
172138 |
ag-ttcaaaattcaatctcatgcaaacatgttcatataatcctctctttctctgaaattccattgaattattagtacatatttcatccgtatccaattgt |
172040 |
T |
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| Q |
298 |
caca-acatacatttaatttaactctagacttcta |
331 |
Q |
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|||| |||| ||||||||| ||||||| ||||||| |
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| T |
172039 |
cacacacattcatttaattaaactctacacttcta |
172005 |
T |
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