View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12551_high_21 (Length: 318)

Name: NF12551_high_21
Description: NF12551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12551_high_21
NF12551_high_21
[»] chr1 (1 HSPs)
chr1 (10-302)||(32327304-32327596)


Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 10 - 302
Target Start/End: Complemental strand, 32327596 - 32327304
Alignment:
Q  10 agaagcagagaccaatcagtcagatatggggtgattgcttatttacatagttatagtatcaagaaacatcacccgcctacggtagagaattgcaatgttg 109  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32327596 agaagcacagaccaatcagtcagatatggggtgattgcttatttacatagttatagtatcaagaaacatcacccgcctacggtagagaattgcaatgttg 32327497  T
Q  110 ccataggaacagttatctgctgaatgattagatgaaatttctgagattttgtcaacaatgaatgcacattgtgcatcctcattgtgacactccttcataa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32327496 ccataggaacagttatctgctgaatgattagatgaaatttctgagattttgtcaacaatgaatgcacattgtgcatcctcattgtgacactccttcataa 32327397  T
Q  210 ttatctgcaggttattgcaaaaatcattgtatataaagaggaaaatcacaataaagcataacatacttttcaaaacagcacactgcatgatgt 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32327396 ttatctgcaggttattgcaaaaatcattgtatataaagaggaaaatcacaataaagcataacatacttttcaaaacagcacactgcatgatgt 32327304  T

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