View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12551_high_25 (Length: 273)
Name: NF12551_high_25
Description: NF12551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12551_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 268
Target Start/End: Original strand, 5174381 - 5174635
Alignment:
| Q |
17 |
taacatagtaattataaaaattcatacgtttgtccaattatacaagttacaaaattttgatcattttttcttnnnnnnngaag---atcattttaataaa |
113 |
Q |
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| T |
5174381 |
taacatagttattataaaaattcatacgtttgtccaattatacaagttacaaaattttgatcattttttcttaaaaaaagaagaagatcattttaataaa |
5174480 |
T |
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| Q |
114 |
aataacaaattttaattttacgtattagtgaattttaaataagggtaagaatagaattagaaagctataattgactccatacagctcattttccaaacaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5174481 |
aataacaaattttaattttacgtattagtgaattttaaataagggtaagaatagaattagaaggctataattgactccatacagctcattttccaaacaa |
5174580 |
T |
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| Q |
214 |
tgtaatagactttctacttcattctattatgttccattctattatgattcattct |
268 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5174581 |
tgtaatagactttctacatcattctattatgttccattctattatgattcattct |
5174635 |
T |
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