View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12551_high_27 (Length: 272)

Name: NF12551_high_27
Description: NF12551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12551_high_27
NF12551_high_27
[»] chr5 (18 HSPs)
chr5 (8-256)||(30241335-30241583)
chr5 (11-238)||(30207444-30207671)
chr5 (8-231)||(29854240-29854463)
chr5 (8-238)||(30061294-30061524)
chr5 (8-238)||(30337479-30337709)
chr5 (11-238)||(29873096-29873323)
chr5 (8-231)||(30676242-30676465)
chr5 (8-238)||(30750568-30750798)
chr5 (46-230)||(30712420-30712604)
chr5 (8-238)||(30436735-30436965)
chr5 (46-230)||(30484331-30484515)
chr5 (8-234)||(17417547-17417773)
chr5 (8-238)||(30476297-30476527)
chr5 (8-238)||(30400996-30401226)
chr5 (17-238)||(30520588-30520809)
chr5 (17-238)||(30560928-30561149)
chr5 (35-238)||(30330190-30330393)
chr5 (46-238)||(17983820-17984012)
[»] chr3 (1 HSPs)
chr3 (11-238)||(25292904-25293131)
[»] chr1 (2 HSPs)
chr1 (9-238)||(7100343-7100572)
chr1 (8-238)||(7580673-7580903)
[»] chr7 (1 HSPs)
chr7 (46-238)||(26708254-26708446)
[»] chr4 (3 HSPs)
chr4 (26-238)||(20295554-20295766)
chr4 (99-238)||(52352881-52353020)
chr4 (8-122)||(13617637-13617751)


Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 256
Target Start/End: Original strand, 30241335 - 30241583
Alignment:
Q  8 gtgtttggacgagaagacgataaaaagaagattatcaggtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttag 107  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30241335 gtgtttggacgagaagacgataaaaagaagattatccagtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttag 30241434  T
Q  108 gtggtcttggaaaaaccactcttcttcaatcggtctacaatgatgttaccgtgagtagcaattttaatactaaagtttgggtttgtgtttctgagaattt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30241435 gtggtcttggaaaaaccactcttcttcaatcggtctacaatgatgttaccgtgagtagcaattttaatactaaagtttgggtttgtgtttctgagaattt 30241534  T
Q  208 ctctgtcaacaggattttgtgttccattatacaatttctcacagaaaag 256  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30241535 ctctgtcaacaggattttgtgttccattatacaatttatcacagaaaag 30241583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 30207671 - 30207444
Alignment:
Q  11 tttggacgagaagacgataaaaagaagattatcaggtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttaggtg 110  Q
    ||||| |||||||| |||||| |||||||||||  |||||||||||||||||| | ||||||||||||||||||| |||||||| || |||| |||||||    
T  30207671 tttgggcgagaagatgataaagagaagattatcgagtttcttctcacccaagcgagggactccgacttcctttccgtctatcccattgttggtttaggtg 30207572  T
Q  111 gtcttggaaaaaccactcttcttcaatcggtctacaatgatgttaccgtgagtagcaattttaatactaaagtttgggtttgtgtttctgagaatttctc 210  Q
    || |||||||||| |||||| |||||| |||||||||||||| ||  |||||||||||||||||||| ||| | |||||||||||||| |||| ||||||    
T  30207571 gtgttggaaaaacaactcttgttcaattggtctacaatgatgctagggtgagtagcaattttaatacaaaaatatgggtttgtgtttccgagactttctc 30207472  T
Q  211 tgtcaacaggattttgtgttccattata 238  Q
     ||||| ||||||||||| |||||||||    
T  30207471 ggtcaagaggattttgtgctccattata 30207444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 8 - 231
Target Start/End: Complemental strand, 29854463 - 29854240
Alignment:
Q  8 gtgtttggacgagaagacgataaaaagaagattatcaggtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttag 107  Q
    ||||||||||||||||| |||||| | |||||| |   |||||||||||||||| | | |||||| |||||||||||| |||||||| ||||||| ||||    
T  29854463 gtgtttggacgagaagatgataaagaaaagattgttgagtttcttctcacccaaacgagggactcagacttcctttccgtctatcccatttttggtttag 29854364  T
Q  108 gtggtcttggaaaaaccactcttcttcaatcggtctacaatgatgttaccgtgagtagcaattttaatactaaagtttgggtttgtgtttctgagaattt 207  Q
    ||||| |||||||||| ||||||||||||| |||||||||||||||||  |||||| |||||||| |||  ||| |||||||||| |||||||| | |||    
T  29854363 gtggtgttggaaaaacaactcttcttcaattggtctacaatgatgttagggtgagtggcaattttgataaaaaaatttgggtttgcgtttctgaaacttt 29854264  T
Q  208 ctctgtcaacaggattttgtgttc 231  Q
    ||| ||||| || |||||||||||    
T  29854263 ctcagtcaagagaattttgtgttc 29854240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 30061524 - 30061294
Alignment:
Q  8 gtgtttggacgagaagacgataaaaagaagattatcaggtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttag 107  Q
    ||||||||||||||||  |||||| | |||||| |   |||||||||||||||||||| |||||| |||||||||||| |||||||| |  |||| ||||    
T  30061524 gtgtttggacgagaagttgataaagaaaagattgttgagtttcttctcacccaagcaagggactctgacttcctttccgtctatcccatagttggtttag 30061425  T
Q  108 gtggtcttggaaaaaccactcttcttcaatcggtctacaatgatgttaccgtgagtagcaattttaatactaaagtttgggtttgtgtttctgagaattt 207  Q
    ||||| |||||||||| |||||| |||||| |||||||||||||||||  |||||| |||||||| | |  ||| ||||||||||||||||||||| |||    
T  30061424 gtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtggcaattttgaaaaaaaaatttgggtttgtgtttctgagacttt 30061325  T
Q  208 ctctgtcaacaggattttgtgttccattata 238  Q
    ||| || || |||||||||||||| ||||||    
T  30061324 ctcggtaaagaggattttgtgttctattata 30061294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 30337479 - 30337709
Alignment:
Q  8 gtgtttggacgagaagacgataaaaagaagattatcaggtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttag 107  Q
    ||||||||||||||||  |||||| | |||||| |   |||||||||||||||||| |||||||| |||||||||||| |||||||| |  |||| ||||    
T  30337479 gtgtttggacgagaagttgataaagaaaagattgttgagtttcttctcacccaagcgaaggactctgacttcctttccgtctatcccatagttggtttag 30337578  T
Q  108 gtggtcttggaaaaaccactcttcttcaatcggtctacaatgatgttaccgtgagtagcaattttaatactaaagtttgggtttgtgtttctgagaattt 207  Q
    ||||| |||||||||| |||||| |||||| |||||||||||||||||  |||||| |||||||| | |  ||| ||||||||||||||||||||| |||    
T  30337579 gtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtggcaattttgaaaaaaaaatttgggtttgtgtttctgagacttt 30337678  T
Q  208 ctctgtcaacaggattttgtgttccattata 238  Q
    ||| || || |||||||||||||| ||||||    
T  30337679 ctcggtaaagaggattttgtgttctattata 30337709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 29873323 - 29873096
Alignment:
Q  11 tttggacgagaagacgataaaaagaagattatcaggtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttaggtg 110  Q
    |||||||||||||| |||||| | |||||| |   |||||||||||||||||| | |||||| |||||||||||| |||||||| || |||| |||||||    
T  29873323 tttggacgagaagatgataaagaaaagattgttgagtttcttctcacccaagcgagggactctgacttcctttccgtctatcccattgttggtttaggtg 29873224  T
Q  111 gtcttggaaaaaccactcttcttcaatcggtctacaatgatgttaccgtgagtagcaattttaatactaaagtttgggtttgtgtttctgagaatttctc 210  Q
    || |||||||||| |||||  |||||| |||||||||||||||||  |||||| |||||||| | |  ||  ||||||||||||||||||||| ||||||    
T  29873223 gtattggaaaaacaactctcgttcaattggtctacaatgatgttagggtgagtggcaattttgacaaaaatatttgggtttgtgtttctgagactttctc 29873124  T
Q  211 tgtcaacaggattttgtgttccattata 238  Q
    |||||| |||||||  ||||||||||||    
T  29873123 tgtcaagaggatttgttgttccattata 29873096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 8 - 231
Target Start/End: Original strand, 30676242 - 30676465
Alignment:
Q  8 gtgtttggacgagaagacgataaaaagaagattatcaggtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttag 107  Q
    ||||||||||||||||  ||| || | |||||| ||  ||||||||||||||| || |||||||| |||||| ||||  |||||||| ||||||| ||||    
T  30676242 gtgtttggacgagaagttgatcaagaaaagattgtcgagtttcttctcacccatgcgaaggactctgacttcatttctgtctatcccatttttggtttag 30676341  T
Q  108 gtggtcttggaaaaaccactcttcttcaatcggtctacaatgatgttaccgtgagtagcaattttaatactaaagtttgggtttgtgtttctgagaattt 207  Q
    ||||| |||||||||| |||||| |||||| | ||| |||||||||||  |||||| || ||||| |||  ||||||||||||||||||||||||| |||    
T  30676342 gtggtattggaaaaacaactcttgttcaattgatcttcaatgatgttagggtgagtggccattttgataaaaaagtttgggtttgtgtttctgagacttt 30676441  T
Q  208 ctctgtcaacaggattttgtgttc 231  Q
    ||| ||||| ||||||||||||||    
T  30676442 ctcggtcaagaggattttgtgttc 30676465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 30750798 - 30750568
Alignment:
Q  8 gtgtttggacgagaagacgataaaaagaagattatcaggtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttag 107  Q
    ||||||||||||||||  |||||| | ||||||     |||||||||||||||||||| |||||| |||||||||||| |||||||| |  |||| ||||    
T  30750798 gtgtttggacgagaagttgataaagaaaagattgctgagtttcttctcacccaagcaagggactctgacttcctttccgtctatcccatagttggtttag 30750699  T
Q  108 gtggtcttggaaaaaccactcttcttcaatcggtctacaatgatgttaccgtgagtagcaattttaatactaaagtttgggtttgtgtttctgagaattt 207  Q
    ||||| |||||||||| |||||| |||||| |||||||||||||||||  ||||||  ||||||| | |  ||| ||||||||||||||||||||| |||    
T  30750698 gtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtgacaattttgaaaaaaaaatttgggtttgtgtttctgagacttt 30750599  T
Q  208 ctctgtcaacaggattttgtgttccattata 238  Q
    ||| || || |||||||||||||| ||||||    
T  30750598 ctcggtaaagaggattttgtgttctattata 30750568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 46 - 230
Target Start/End: Original strand, 30712420 - 30712604
Alignment:
Q  46 gtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttaggtggtcttggaaaaaccactcttcttcaatcggtctac 145  Q
    ||||||||||||||| || |||||||| |||||| ||||  |||||||| || |||| ||||||||| |||||||||| |||||| |||||| | |||||    
T  30712420 gtttcttctcacccatgcgaaggactctgacttcatttctgtctatcccattgttggtttaggtggtattggaaaaacaactcttgttcaattgatctac 30712519  T
Q  146 aatgatgttaccgtgagtagcaattttaatactaaagtttgggtttgtgtttctgagaatttctctgtcaacaggattttgtgtt 230  Q
    ||||||||||  |||||| |||||||| |||  ||| ||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  30712520 aatgatgttagggtgagtcgcaattttgataaaaaattttgggtttgtgtttctgagactttctcggtcaagaggattttgtgtt 30712604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 30436965 - 30436735
Alignment:
Q  8 gtgtttggacgagaagacgataaaaagaagattatcaggtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttag 107  Q
    ||||| ||| |||| || |||||| | |||||| ||  ||||||||| ||||  || |||||||| |||||  ||||  ||||||||||| |||| ||||    
T  30436965 gtgttaggaagagacgatgataaagaaaagattgtccagtttcttcttacccttgcgaaggactctgactttatttctgtctatcccgttgttggtttag 30436866  T
Q  108 gtggtcttggaaaaaccactcttcttcaatcggtctacaatgatgttaccgtgagtagcaattttaatactaaagtttgggtttgtgtttctgagaattt 207  Q
    ||||| |||||||||| |||||| |||||| | |||||||||||||||  |||||| |||||||| |||  ||| ||||||||||||||||||||| |||    
T  30436865 gtggtattggaaaaacaactcttgttcaattgatctacaatgatgttagggtgagtcgcaattttgataaaaaaatttgggtttgtgtttctgagacttt 30436766  T
Q  208 ctctgtcaacaggattttgtgttccattata 238  Q
    ||| ||||| |||||||||||||| ||||||    
T  30436765 ctcggtcaaaaggattttgtgttctattata 30436735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 46 - 230
Target Start/End: Complemental strand, 30484515 - 30484331
Alignment:
Q  46 gtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttaggtggtcttggaaaaaccactcttcttcaatcggtctac 145  Q
    ||||||||||||| | || ||||||||  ||||| ||||  |||||||| || |||| ||||||||| |||||||||| |||||| |||||| | |||||    
T  30484515 gtttcttctcacctatgcgaaggactctaacttcatttctgtctatcccattgttggtttaggtggtattggaaaaacaactcttgttcaattgatctac 30484416  T
Q  146 aatgatgttaccgtgagtagcaattttaatactaaagtttgggtttgtgtttctgagaatttctctgtcaacaggattttgtgtt 230  Q
    ||||||||||  |||||| |||||||| |||  ||| ||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  30484415 aatgatgttagggtgagtcgcaattttgataaaaaaatttgggtttgtgtttctgagactttctcggtcaagaggattttgtgtt 30484331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 8 - 234
Target Start/End: Original strand, 17417547 - 17417773
Alignment:
Q  8 gtgtttggacgagaagacgataaaaagaagattatcaggtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttag 107  Q
    ||||||||||| ||||| |||| |||||||||| |   |||||| ||||||||||||| ||| |  ||  |||||||  |||||||| |  |||||||||    
T  17417547 gtgtttggacgggaagatgatacaaagaagattgttgagtttctgctcacccaagcaagggattgtgaaatcctttcagtctatcccatagttgggttag 17417646  T
Q  108 gtggtcttggaaaaaccactcttcttcaatcggtctacaatgatgttaccgtgagtagcaattttaatactaaagtttgggtttgtgtttctgagaattt 207  Q
    ||||| |||| ||||| |||||   ||||| |||||||||||||||||  |||||||||||||||||||| ||| ||||| |||||||||||||   |||    
T  17417647 gtggtattggtaaaacaactctagctcaattggtctacaatgatgttagggtgagtagcaattttaatacaaaaatttggatttgtgtttctgatgcttt 17417746  T
Q  208 ctctgtcaacaggattttgtgttccat 234  Q
    |||  |||| |||||||||||||||||    
T  17417747 ctcaatcaagaggattttgtgttccat 17417773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 30476527 - 30476297
Alignment:
Q  8 gtgtttggacgagaagacgataaaaagaagattatcaggtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttag 107  Q
    ||||||||||||| ||| |||| | ||| |||| ||  ||||||||||||||||||  | |  || |||||||| |||||||||||  || ||||  |||    
T  30476527 gtgtttggacgagtagatgatagagagaggattgtcgagtttcttctcacccaagcgcaagtatctgacttcctatccatctatcctattgttggcctag 30476428  T
Q  108 gtggtcttggaaaaaccactcttcttcaatcggtctacaatgatgttaccgtgagtagcaattttaatactaaagtttgggtttgtgtttctgagaattt 207  Q
    ||||| |||| ||||| || |||  ||||  |||||||||||||  ||  || ||||||||||||||||| ||||||||| |||||||||| |||| |||    
T  30476427 gtggtgttggtaaaacaacacttgctcaaatggtctacaatgatcatagggtaagtagcaattttaatacaaaagtttggatttgtgtttcggagacttt 30476328  T
Q  208 ctctgtcaacaggattttgtgttccattata 238  Q
    ||||||||| |||||||||||||||||||||    
T  30476327 ctctgtcaaaaggattttgtgttccattata 30476297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 30401226 - 30400996
Alignment:
Q  8 gtgtttggacgagaagacgataaaaagaagattatcaggtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttag 107  Q
    |||||||||||| |||| |||||| | |||||| |   ||||||||||||||| || | |||||| |||||||||||| |||| ||| || |||| ||||    
T  30401226 gtgtttggacgaaaagatgataaagaaaagatttttgagtttcttctcacccatgcgagggactctgacttcctttccgtctaccccattgttggtttag 30401127  T
Q  108 gtggtcttggaaaaaccactcttcttcaatcggtctacaatgatgttaccgtgagtagcaattttaatactaaagtttgggtttgtgtttctgagaattt 207  Q
    ||||| |||| ||||| |||||| |||||| |||||||||||||||||  |||||   | ||||| | |  | |  ||||||||||||||| |||| |||    
T  30401126 gtggtattggtaaaacaactcttgttcaattggtctacaatgatgttagggtgagggactattttgacataagatcttgggtttgtgtttccgagacttt 30401027  T
Q  208 ctctgtcaacaggattttgtgttccattata 238  Q
    ||||||||| |||||||||||||| ||||||    
T  30401026 ctctgtcaagaggattttgtgttctattata 30400996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 30520588 - 30520809
Alignment:
Q  17 cgagaagacgataaaaagaagattatcaggtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttaggtggtcttg 116  Q
    |||||||| |||||| |||||||| ||  ||||||||||||||||||||||| ||| ||| ||||||||||||||||  || |||| ||||||||| |||    
T  30520588 cgagaagatgataaagagaagattgtcgagtttcttctcacccaagcaaagggctctgacctcctttccatctatccaattgttggcttaggtggtattg 30520687  T
Q  117 gaaaaaccactcttcttcaatcggtctacaatgatgttaccgtgagtagcaattttaatactaaagtttgggtttgtgtttctgagaatttctctgtcaa 216  Q
    | ||||| ||||||  |||||  || || ||||||      ||||||  ||||||| |||| ||| ||||||||||||||||||||  ||||||||| ||    
T  30520688 ggaaaacaactcttgctcaattagtttataatgatcaccgggtgagtgacaattttgatacaaaaatttgggtttgtgtttctgaggctttctctgttaa 30520787  T
Q  217 caggattttgtgttccattata 238  Q
    ||  ||||||||| | ||||||    
T  30520788 caaaattttgtgtactattata 30520809  T

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Target: chr5; HSP #16
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 30560928 - 30561149
Alignment:
Q  17 cgagaagacgataaaaagaagattatcaggtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttaggtggtcttg 116  Q
    |||||||| |||||| |||||||| ||  ||||||||||||||||||||||| ||| ||| ||||||||||||||||  || |||| ||||||||| |||    
T  30560928 cgagaagatgataaagagaagattgtcgagtttcttctcacccaagcaaagggctctgacctcctttccatctatccaattgttggcttaggtggtattg 30561027  T
Q  117 gaaaaaccactcttcttcaatcggtctacaatgatgttaccgtgagtagcaattttaatactaaagtttgggtttgtgtttctgagaatttctctgtcaa 216  Q
    | ||||| ||||||  |||||  || || ||||||      ||||||  ||||||| |||| ||| ||||||||||||||||||||  ||||||||| ||    
T  30561028 ggaaaacaactcttgctcaattagtttataatgatcaccgggtgagtgacaattttgatacaaaaatttgggtttgtgtttctgaggctttctctgttaa 30561127  T
Q  217 caggattttgtgttccattata 238  Q
    ||  ||||||||| | ||||||    
T  30561128 caaaattttgtgtactattata 30561149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 238
Target Start/End: Original strand, 30330190 - 30330393
Alignment:
Q  35 aagattatcaggtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttaggtggtcttggaaaaaccactcttcttc 134  Q
    |||||| ||| |||||||||||||||||| | |||| | ||||||||||||||||||||| |  |||| ||||| ||| |||||||||| ||| || |||    
T  30330190 aagattgtcaagtttcttctcacccaagcgagggacactgacttcctttccatctatcccatagttggtttaggaggtattggaaaaacaactattgttc 30330289  T
Q  135 aatcggtctacaatgatgttaccgtgagtagcaattttaatactaaagtttgggtttgtgtttctgagaatttctctgtcaacaggattttgtgttccat 234  Q
     || | || || ||||| |||  |||||| | ||||||||||  | | ||||||||||||| | ||||| ||||||| |||| |||||| ||||||| ||    
T  30330290 gattgatccacgatgatattagggtgagtggaaattttaatataataatttgggtttgtgtatatgagactttctctctcaataggattgtgtgttctat 30330389  T
Q  235 tata 238  Q
    ||||    
T  30330390 tata 30330393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 238
Target Start/End: Complemental strand, 17984012 - 17983820
Alignment:
Q  46 gtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttaggtggtcttggaaaaaccactcttcttcaatcggtctac 145  Q
    |||||||||||||||||| | |  ||| |||||||||||| |||||||| || |||||||||||||| |||||||||| ||||||  ||||| |||||||    
T  17984012 gtttcttctcacccaagcgaggttctctgacttcctttccgtctatcccattgttgggttaggtggtgttggaaaaacaactcttgctcaattggtctac 17983913  T
Q  146 aatgatgttaccgtgagtagcaatttt-aatactaaagtttgggtttgtgtttctgagaatttctctgtcaacaggattttgtgttccattata 238  Q
    || |||| || ||||||| | |||||| || || ||| |||||||||| |||||  ||  |||||| |||||  | |||||||||||| |||||    
T  17983912 aacgatgataacgtgagt-gaaattttcaaaacaaaaatttgggtttgggtttcaaaggttttctcagtcaagggaattttgtgttccgttata 17983820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 25292904 - 25293131
Alignment:
Q  11 tttggacgagaagacgataaaaagaagattatcaggtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttaggtg 110  Q
    |||||||||||||| |||||| |||||| | ||  ||||||||| |||||||||| |||||| |||||||||||| || ||||| || |||| |||||||    
T  25292904 tttggacgagaagatgataaagagaagactgtcgagtttcttcttacccaagcaagggactctgacttcctttccgtccatcccattgttggtttaggtg 25293003  T
Q  111 gtcttggaaaaaccactcttcttcaatcggtctacaatgatgttaccgtgagtagcaattttaatactaaagtttgggtttgtgtttctgagaatttctc 210  Q
    || |||||||||| |||||| |||||| |||||||||||||||||  |||||||||| ||||||||| ||| ||||||||||||||||||||| ||||||    
T  25293004 gtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtagcacttttaatacaaaaatttgggtttgtgtttctgagactttctc 25293103  T
Q  211 tgtcaacaggattttgtgttccattata 238  Q
     ||||| |||||||||||||||||||||    
T  25293104 ggtcaagaggattttgtgttccattata 25293131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 9 - 238
Target Start/End: Complemental strand, 7100572 - 7100343
Alignment:
Q  9 tgtttggacgagaagacgataaaaagaagattatcaggtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttagg 108  Q
    |||||||||||||||| |||||| |||||||| |   ||||||||||||||||||||||||||| |||||||| ||| |||||||| || | || |||||    
T  7100572 tgtttggacgagaagatgataaagagaagattgttgagtttcttctcacccaagcaaaggactctgacttcctatccgtctatcccattgtcggtttagg 7100473  T
Q  109 tggtcttggaaaaaccactcttcttcaatcggtctacaatgatgttaccgtgagtagcaattttaatactaaagtttgggtttgtgtttctgagaatttc 208  Q
    |||| |||||||||| ||||||  ||||| ||| |||||||||| ||  ||||||  |||||| || || ||| |||||||||||||||| |||  ||||    
T  7100472 tggtgttggaaaaacaactctttctcaattggtttacaatgatgatagggtgagtgacaatttcaaaacaaaaatttgggtttgtgtttcagaggttttc 7100373  T
Q  209 tctgtcaacaggattttgtgttccattata 238  Q
    || |||||  ||||||||||||||||||||    
T  7100372 tcagtcaaggggattttgtgttccattata 7100343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 7580673 - 7580903
Alignment:
Q  8 gtgtttggacgagaagacgataaaaagaagattatcaggtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttag 107  Q
    ||||||||||||||||| |||||| ||| |||| |   |||||||||||||||||| | |||||| |||||||||||| |||||||  || |||| ||||    
T  7580673 gtgtttggacgagaagatgataaagagaggattgttgagtttcttctcacccaagcgagggactcggacttcctttccgtctatccaattgttggtttag 7580772  T
Q  108 gtggtcttggaaaaaccactcttcttcaatcggtctacaatgatgttaccgtgagtagcaattttaatactaaagtttgggtttgtgtttctgagaattt 207  Q
    ||||| |||||||||| ||||||  ||||| ||||||||| |||| ||  ||||||  |||||| || || ||| |||||||||||||||| |||   ||    
T  7580773 gtggtgttggaaaaacaactcttgctcaattggtctacaacgatgatagggtgagtcacaatttcaaaacaaaaatttgggtttgtgtttcagaggtatt 7580872  T
Q  208 ctctgtcaacaggattttgtgttccattata 238  Q
    ||| |||||  ||||||||||||||||||||    
T  7580873 ctcggtcaaggggattttgtgttccattata 7580903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 46 - 238
Target Start/End: Complemental strand, 26708446 - 26708254
Alignment:
Q  46 gtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttaggtggtcttggaaaaaccactcttcttcaatcggtctac 145  Q
    ||||||||||||||| || |||||||| |||||| ||||  |||||||| || |||| ||||||||| |||||||||| |||||| |||| | | |||||    
T  26708446 gtttcttctcacccatgcgaaggactctgacttcatttctgtctatcccattgttggcttaggtggtattggaaaaacaactcttgttcagttgatctac 26708347  T
Q  146 aatgatgttaccgtgagtagcaattttaatactaaagtttgggtttgtgtttctgagaatttctctgtcaacaggattttgtgttccattata 238  Q
    || |||||||  ||||||  ||||||| |||  ||| ||||||||||||||||||||| |||||| ||||| |||||||||||||| ||||||    
T  26708346 aacgatgttagggtgagtgacaattttgataaaaaaatttgggtttgtgtttctgagactttctcagtcaagaggattttgtgttctattata 26708254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 26 - 238
Target Start/End: Original strand, 20295554 - 20295766
Alignment:
Q  26 gataaaaagaagattatcaggtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttaggtggtcttggaaaaacca 125  Q
    |||||||| |||||| ||  ||||||||||||||| || |||||||| |||||| ||||  |||||||| || |||| ||||||||| |||||||||| |    
T  20295554 gataaaaaaaagattgtcgagtttcttctcacccatgcgaaggactctgacttcatttctgtctatcccattgttggtttaggtggtattggaaaaacaa 20295653  T
Q  126 ctcttcttcaatcggtctacaatgatgttaccgtgagtagcaattttaatactaaagtttgggtttgtgtttctgagaatttctctgtcaacaggatttt 225  Q
    ||||| ||||||  ||||||||||||| |  ||||||| |||||||| |||  | | ||||||||||||||||||||| ||||||  || | ||||||||    
T  20295654 ctcttgttcaattagtctacaatgatgatcgcgtgagtggcaattttgataaaagaatttgggtttgtgtttctgagactttctccttcgagaggatttt 20295753  T
Q  226 gtgttccattata 238  Q
    | |||| ||||||    
T  20295754 gcgttctattata 20295766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 52353020 - 52352881
Alignment:
Q  99 ttgggttaggtggtcttggaaaaaccactcttcttcaatcggtctacaatgatgttaccgtgagtagcaattttaatactaaagtttgggtttgtgtttc 198  Q
    |||| ||||||||| |||| ||||| |||||| |||||| |||||||||||||||||  |||||||  || ||| |||  ||| ||||||||||||||||    
T  52353020 ttggtttaggtggtgttggtaaaacaactcttgttcaattggtctacaatgatgttagagtgagtaaaaaatttcatagaaaaatttgggtttgtgtttc 52352921  T
Q  199 tgagaatttctctgtcaacaggattttgtgttccattata 238  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  52352920 tgaggatttctctgtcaataggattttgtgttccattata 52352881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 13617751 - 13617637
Alignment:
Q  8 gtgtttggacgagaagacgataaaaagaagattatcaggtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttag 107  Q
    |||||||||||| ||||  ||||| |||||||| | ||||||| |||||||||||  | || ||| ||||| |||||   ||||||| || |||| ||||    
T  13617751 gtgtttggacgataagataataaagagaagattgttaggtttcatctcacccaagtgagggcctctgactttctttctgactatcccattgttggtttag 13617652  T
Q  108 gtggtcttggaaaaa 122  Q
    ||||| ||| |||||    
T  13617651 gtggtgttgcaaaaa 13617637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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