View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12551_high_29 (Length: 250)

Name: NF12551_high_29
Description: NF12551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12551_high_29
NF12551_high_29
[»] chr5 (19 HSPs)
chr5 (1-243)||(30241031-30241273)
chr5 (12-239)||(29854533-29854775)
chr5 (12-239)||(29873396-29873638)
chr5 (29-215)||(30437052-30437238)
chr5 (21-243)||(30061603-30061840)
chr5 (21-243)||(30337163-30337400)
chr5 (21-243)||(30484632-30484869)
chr5 (21-243)||(30712066-30712303)
chr5 (21-243)||(30750877-30751114)
chr5 (138-243)||(30401440-30401545)
chr5 (138-220)||(30207885-30207967)
chr5 (21-243)||(30675926-30676163)
chr5 (154-243)||(30476754-30476843)
chr5 (124-236)||(17417313-17417425)
chr5 (132-233)||(30329489-30329590)
chr5 (186-243)||(30520263-30520320)
chr5 (186-243)||(30560603-30560660)
chr5 (142-208)||(17984257-17984323)
chr5 (23-108)||(30401310-30401395)
[»] chr7 (1 HSPs)
chr7 (21-243)||(26708563-26708785)
[»] chr3 (1 HSPs)
chr3 (124-243)||(25292585-25292704)
[»] chr4 (2 HSPs)
chr4 (130-243)||(52353316-52353429)
chr4 (21-243)||(20295220-20295457)
[»] chr1 (2 HSPs)
chr1 (141-227)||(7100772-7100858)
chr1 (130-208)||(7580401-7580479)


Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 30241273 - 30241031
Alignment:
Q  1 cgaacagttccagtaccttcctgtagaaaaaacttcttcttcctatcagcaatatcatccaacctccggttaatctcttccaacctgttaccgatctcat 100  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30241273 cgaacagttccagtaccttcctgcagaaaaaacttcttcctcctatcagcaatatcatccaacctcccgttaatctcttccaacctgttaccgatctcat 30241174  T
Q  101 ggcgaaacttgagagaggttaatcctctcagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacagaatctttgagttgttg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  30241173 ggcgaaacttgagagaggttaatcctctcagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttg 30241074  T
Q  201 cagccataccttaatagagcagtctgtgacttgtttcttctca 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30241073 cagccataccttaatagagcagtctgtgacttgtttcttctca 30241031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 29854533 - 29854775
Alignment:
Q  12 agtaccttcctgtagaaaaaacttcttcttcctatcagcaatatcatccaacctccggttaatctcttccaacctgttaccgatctcatggcgaaac--- 108  Q
    |||||| ||| ||||||||||||| ||||| ||||||||||||||||||||  |||   ||||||||| ||||||||| ||||||||||||||||||       
T  29854533 agtaccctcccgtagaaaaaacttgttcttactatcagcaatatcatccaatttccttgtaatctctttcaacctgttgccgatctcatggcgaaacatg 29854632  T
Q  109 ------------ttgagagaggttaatcctctcagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacagaatctttgagtt 196  Q
                |||| ||||||||||||||| ||| ||| ||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||    
T  29854633 atgttctttggtttgaaagaggttaatcctctaagttgaccagacttgattgaacactcatcaaggatatcatcgagcacataaacagcatctttgagtt 29854732  T
Q  197 gttgcagccataccttaatagagcagtctgtgacttgtttctt 239  Q
    |||| ||||||||||||||||||  ||||||||||||||||||    
T  29854733 gttgtagccataccttaatagagtggtctgtgacttgtttctt 29854775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 29873396 - 29873638
Alignment:
Q  12 agtaccttcctgtagaaaaaacttcttcttcctatcagcaatatcatccaacctccggttaatctcttccaacctgttaccgatctcatggcgaaacttg 111  Q
    |||||| ||| ||||||||||||| ||||| |||||||||||||||||||| ||||   ||||||||| ||||||||| ||||||||| |||||||| ||    
T  29873396 agtaccctcccgtagaaaaaacttgttcttactatcagcaatatcatccaatctccttgtaatctctttcaacctgttgccgatctcaaggcgaaacatg 29873495  T
Q  112 ag---------------agaggttaatcctctcagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacagaatctttgagtt 196  Q
    |                |||| || ||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  29873496 atgttatttggtttaaaagagattgatcctctaagttgaccagacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagtt 29873595  T
Q  197 gttgcagccataccttaatagagcagtctgtgacttgtttctt 239  Q
    |||| ||||||||||||||||||| ||||||||||||||||||    
T  29873596 gttgtagccataccttaatagagcggtctgtgacttgtttctt 29873638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 29 - 215
Target Start/End: Original strand, 30437052 - 30437238
Alignment:
Q  29 aaaacttcttcttcctatcagcaatatcatccaacctccggttaatctcttccaacctgttaccgatctcatggcgaaacttgagagaggttaatcctct 128  Q
    ||||||| ||||| |  |||||||||  |||||||||||   ||||||||| ||||||||||||||||| |||||||||||| | ||| || |||  |||    
T  30437052 aaaacttgttcttacgttcagcaatacgatccaacctccctgtaatctctttcaacctgttaccgatcttatggcgaaactttaaagatgtgaattttct 30437151  T
Q  129 cagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacagaatctttgagttgttgcagccataccttaat 215  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||| | ||| ||||||||||||||    
T  30437152 cagtcgactagacttgatcgaacactcatcaaggatgtcatcgagcacataaacagcatctttgaggtcttgtagccataccttaat 30437238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 30061603 - 30061840
Alignment:
Q  21 ctgtagaaaaaacttcttcttcctatcagcaatatcatccaacctccggttaatctcttccaacctgttaccgatctcatggcgaaac------------ 108  Q
    ||||||| ||||||| ||||| || |||||||||||||| |||||||   |||||||||  ||||||||||| |||||||||||||||                
T  30061603 ctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttgaacctgttaccaatctcatggcgaaacatgatgttcttt 30061702  T
Q  109 ---ttgagagaggttaatcctctcagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacagaatctttgagttgttgcagcc 205  Q
       |||| |||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||| | ||| | ||    
T  30061703 ggtttgaaagaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacaccatctttgaggtcttgtaacc 30061802  T
Q  206 ataccttaatagagcagtctgtgacttgtttcttctca 243  Q
    ||| ||||||||||   ||| ||| |||||||||||||    
T  30061803 atagcttaatagagagttctttgaattgtttcttctca 30061840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 30337400 - 30337163
Alignment:
Q  21 ctgtagaaaaaacttcttcttcctatcagcaatatcatccaacctccggttaatctcttccaacctgttaccgatctcatggcgaaacttgag------- 113  Q
    ||||||| ||||||| ||||| |  |||||||||| ||| |||||||   ||||||||| ||||||||||||||||||||||||||||||||            
T  30337400 ctgtagagaaaacttgttcttacgttcagcaatattatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttcttt 30337301  T
Q  114 --------agaggttaatcctctcagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacagaatctttgagttgttgcagcc 205  Q
            |||||| |||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||| | ||| | ||    
T  30337300 ggtttgaaagaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaacc 30337201  T
Q  206 ataccttaatagagcagtctgtgacttgtttcttctca 243  Q
    ||| ||||||||||   ||| ||| |||||||||||||    
T  30337200 atagcttaatagagagttctttgaattgtttcttctca 30337163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 30484632 - 30484869
Alignment:
Q  21 ctgtagaaaaaacttcttcttcctatcagcaatatcatccaacctccggttaatctcttccaacctgttaccgatctcatggcgaaac------------ 108  Q
    ||||||| ||||||| ||||| || |||||||||||||| |||||||   ||||||||| |||||||||||| |||||||||||||||                
T  30484632 ctgtagagaaaacttgttctttctttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccaatctcatggcgaaacatgatgttcttt 30484731  T
Q  109 ---ttgagagaggttaatcctctcagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacagaatctttgagttgttgcagcc 205  Q
       |||| |||||| |||||||| ||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||| | ||| | ||    
T  30484732 ggtttgaaagaggtaaatcctctgagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaacc 30484831  T
Q  206 ataccttaatagagcagtctgtgacttgtttcttctca 243  Q
    ||| ||||||||||   ||| ||| |||||||||||||    
T  30484832 atagcttaatagagagttctttgaattgtttcttctca 30484869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 30712303 - 30712066
Alignment:
Q  21 ctgtagaaaaaacttcttcttcctatcagcaatatcatccaacctccggttaatctcttccaacctgttaccgatctcatggcgaaac------------ 108  Q
    ||||||| ||||||| ||||| || |||||||||||||| |||||||   |||||||||  ||||||||||| |||||||||||||||                
T  30712303 ctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttgaacctgttaccaatctcatggcgaaacatgatgttcttt 30712204  T
Q  109 ---ttgagagaggttaatcctctcagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacagaatctttgagttgttgcagcc 205  Q
       |||| |||||| |||||||||||||||  ||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||| | ||| | ||    
T  30712203 agtttgaaagaggtaaatcctctcagtcgaaaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaacc 30712104  T
Q  206 ataccttaatagagcagtctgtgacttgtttcttctca 243  Q
    ||| ||||||||||   ||| ||| |||||||||||||    
T  30712103 atagcttaatagagagttctttgaattgtttcttctca 30712066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 30750877 - 30751114
Alignment:
Q  21 ctgtagaaaaaacttcttcttcctatcagcaatatcatccaacctccggttaatctcttccaacctgttaccgatctcatggcgaaac------------ 108  Q
    ||||||| ||||||| ||||| || |||||||||||||| |||||||   |||||||||  ||||||||||| |||||||||||||||                
T  30750877 ctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccaatctcatggcgaaacatgatgttcttt 30750976  T
Q  109 ---ttgagagaggttaatcctctcagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacagaatctttgagttgttgcagcc 205  Q
       |||| ||||||  ||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||| | ||| | ||    
T  30750977 ggtttgaaagaggtacatcctctcagtcgacaagacttaatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaacc 30751076  T
Q  206 ataccttaatagagcagtctgtgacttgtttcttctca 243  Q
    ||| ||||||||||   ||| ||| |||||||||||||    
T  30751077 atagcttaatagagagttctttgaattgtttcttctca 30751114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 138 - 243
Target Start/End: Original strand, 30401440 - 30401545
Alignment:
Q  138 agacttgatcgagcactcatcaaggatatcatcgagcacataaacagaatctttgagttgttgcagccataccttaatagagcagtctgtgacttgtttc 237  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||| |||| |||||||| ||    
T  30401440 agactcgatcgaacactcatcaaggatatcatcgagcacataaacagcatctttgagttgttggagccataccttaatatagctgtctttgacttgtctc 30401539  T
Q  238 ttctca 243  Q
    ||||||    
T  30401540 ttctca 30401545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 138 - 220
Target Start/End: Original strand, 30207885 - 30207967
Alignment:
Q  138 agacttgatcgagcactcatcaaggatatcatcgagcacataaacagaatctttgagttgttgcagccataccttaatagagc 220  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||    
T  30207885 agactcgatcgagcactcatcaaggatatcatcgagcacataaacagcatctttgagttgttgtagccatacctttatagagc 30207967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 30676163 - 30675926
Alignment:
Q  21 ctgtagaaaaaacttcttcttcctatcagcaatatcatccaacctccggttaatctcttccaacctgttaccgatctcatggcgaaac------------ 108  Q
    ||||||| ||||||| ||||| || |||||||||||||| |||||||   |||||||||  |||||||| |||||||||  |||||||                
T  30676163 ctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttgccgatctcactgcgaaacatgatgttcttt 30676064  T
Q  109 ---ttgagagaggttaatcctctcagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacagaatctttgagttgttgcagcc 205  Q
       |||||||||| | ||||||| ||| ||| ||||||||| ||  ||||||||||||||||||||||||||||||||| ||||||||| | ||| | ||    
T  30676063 ggtttgagagaggatgatcctctaagttgaccagacttgattgaatactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaacc 30675964  T
Q  206 ataccttaatagagcagtctgtgacttgtttcttctca 243  Q
    ||| ||||||||||   ||| ||| |||||||||||||    
T  30675963 atagcttaatagagagttctttgaattgtttcttctca 30675926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 30476754 - 30476843
Alignment:
Q  154 tcatcaaggatatcatcgagcacataaacagaatctttgagttgttgcagccataccttaatagagcagtctgtgacttgtttcttctca 243  Q
    |||||||| |||||||| |||||||| |||| ||||||||||||||| ||||||||||||||||||| ||||||||| ||||||| ||||    
T  30476754 tcatcaagaatatcatcaagcacatatacagcatctttgagttgttggagccataccttaatagagcggtctgtgacctgtttctgctca 30476843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 124 - 236
Target Start/End: Complemental strand, 17417425 - 17417313
Alignment:
Q  124 cctctcagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacagaatctttgagttgttgcagccataccttaatagagcagt 223  Q
    ||||| || |||| ||||| ||| |||||||||||||| |||||||| ||||||||||||  ||||||||||||||| |||||||||||  ||||||  |    
T  17417425 cctctaagccgaccagactcgattgagcactcatcaagaatatcatctagcacataaacaacatctttgagttgttgaagccataccttgttagagcgat 17417326  T
Q  224 ctgtgacttgttt 236  Q
    |||||||||||||    
T  17417325 ctgtgacttgttt 17417313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 30329590 - 30329489
Alignment:
Q  132 tcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacagaatctttgagttgttgcagccataccttaatagagcagtctgtgact 231  Q
    ||||| ||||| |||| |||||||||||||||||||||| |||||||| | |  |||||||| |||||| ||||||| ||||||||||| ||||| ||||    
T  30329590 tcgaccagactcgatcaagcactcatcaaggatatcatcaagcacatatatatcatctttgatttgttgaagccatatcttaatagagcggtctgagact 30329491  T
Q  232 tg 233  Q
    ||    
T  30329490 tg 30329489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 30520320 - 30520263
Alignment:
Q  186 atctttgagttgttgcagccataccttaatagagcagtctgtgacttgtttcttctca 243  Q
    ||||||||||||||| ||||||||||| ||||||| |||||| | |||||||||||||    
T  30520320 atctttgagttgttgaagccatacctttatagagcggtctgttatttgtttcttctca 30520263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 30560660 - 30560603
Alignment:
Q  186 atctttgagttgttgcagccataccttaatagagcagtctgtgacttgtttcttctca 243  Q
    ||||||||||||||| ||||||||||| ||||||| |||||| | |||||||||||||    
T  30560660 atctttgagttgttgaagccatacctttatagagcggtctgttatttgtttcttctca 30560603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 17984257 - 17984323
Alignment:
Q  142 ttgatcgagcactcatcaaggatatcatcgagcacataaacagaatctttgagttgttgcagccata 208  Q
    |||||||| || ||||| ||||||||||| |||||| | || | |||||||||||| ||||||||||    
T  17984257 ttgatcgaacattcatctaggatatcatcaagcacaaacaccgcatctttgagttgctgcagccata 17984323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 30401310 - 30401395
Alignment:
Q  23 gtagaaaaaacttcttcttcctatcagcaatatcatccaacctccggttaatctcttccaacctgttaccgatctcatggcgaaac 108  Q
    |||||| ||| || |||||  ||||||||||||||||||| || |   ||||||||| ||||||||| ||||||| | ||||||||    
T  30401310 gtagaagaaatttgttcttaatatcagcaatatcatccaatcttcttgtaatctctttcaacctgttgccgatctgacggcgaaac 30401395  T

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Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 26708563 - 26708785
Alignment:
Q  21 ctgtagaaaaaacttcttcttcctatcagcaatatcatccaacctccggttaatctcttccaacctgttaccgatctcatggcgaaacttgagagaggtt 120  Q
    ||||||| ||||||| ||||| |  |||||||||  |||||||||||   ||||||||| ||||||||||||||||| |||||||||||| | ||||||     
T  26708563 ctgtagagaaaacttgttcttacgttcagcaatacgatccaacctccctgtaatctctttcaacctgttaccgatcttatggcgaaactttaaagaggtg 26708662  T
Q  121 aatcctctcagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacagaatctttgagttgttgcagccataccttaatagagc 220  Q
    |||  | ||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||  ||||||||| | ||| ||||||||||||||| ||     
T  26708663 aattttttcagtcgactagacttgatcgagcattcatcaaggatgtcatcgagcacatatacaacatctttgaggtcttgtagccataccttaataaagt 26708762  T
Q  221 agtctgtgacttgtttcttctca 243  Q
     ||||||||||||| ||||||||    
T  26708763 tgtctgtgacttgtctcttctca 26708785  T

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Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 124 - 243
Target Start/End: Complemental strand, 25292704 - 25292585
Alignment:
Q  124 cctctcagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacagaatctttgagttgttgcagccataccttaatagagcagt 223  Q
    ||||| ||||||||||| |||||| | ||||||||||||||||||||||||||||| |||  ||||||||||||||| |||||||||||||||||||  |    
T  25292704 cctctaagtcgactagatttgatcaatcactcatcaaggatatcatcgagcacatatacaacatctttgagttgttgtagccataccttaatagagcgat 25292605  T
Q  224 ctgtgacttgtttcttctca 243  Q
    ||||||||||||||| ||||    
T  25292604 ctgtgacttgtttctgctca 25292585  T

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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 130 - 243
Target Start/End: Original strand, 52353316 - 52353429
Alignment:
Q  130 agtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacagaatctttgagttgttgcagccataccttaatagagcagtctgtga 229  Q
    ||||||||||| |||||||| || |||||||||||||||||||| || ||||||| |||||||||||| || |||||||| |||||||||| ||||||||    
T  52353316 agtcgactagatttgatcgaacattcatcaaggatatcatcgagaacgtaaacagcatctttgagttgctgaagccatactttaatagagcggtctgtga 52353415  T
Q  230 cttgtttcttctca 243  Q
    ||||||||| ||||    
T  52353416 cttgtttctgctca 52353429  T

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Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 20295457 - 20295220
Alignment:
Q  21 ctgtagaaaaaacttcttcttcctatcagcaatatcatccaacctccggttaatctcttccaacctgttaccgatctcatggcgaaac------------ 108  Q
    ||||||| ||||||| ||||| || |||||||||||||| |||||||   |||||||||  |||||| ||||||||||||||||||||                
T  20295457 ctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttaaacctgctaccgatctcatggcgaaacgcgatgttcatt 20295358  T
Q  109 ---ttgagagaggttaatcctctcagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacagaatctttgagttgttgcagcc 205  Q
       |||| |||| | |||||||||||||||| ||||| ||||||| ||||||||||||||||| ||||||||||||||| ||||||||| | ||| | ||    
T  20295357 ggtttgaaagagttaaatcctctcagtcgaccagactcgatcgagtactcatcaaggatatcaccgagcacataaacagcatctttgaggtcttgtaacc 20295258  T
Q  206 ataccttaatagagcagtctgtgacttgtttcttctca 243  Q
    ||  ||||||||||   ||| ||| |||||||||||||    
T  20295257 attgcttaatagagagttctttgaattgtttcttctca 20295220  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 227
Target Start/End: Original strand, 7100772 - 7100858
Alignment:
Q  141 cttgatcgagcactcatcaaggatatcatcgagcacataaacagaatctttgagttgttgcagccataccttaatagagcagtctgt 227  Q
    |||||| || || ||||||||||||||||| |||||||| || | |||||||||||| ||||||||||  | |||||||| ||||||    
T  7100772 cttgatggaacattcatcaaggatatcatcaagcacatacaccgcatctttgagttgctgcagccatatttgaatagagcggtctgt 7100858  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 208
Target Start/End: Complemental strand, 7580479 - 7580401
Alignment:
Q  130 agtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacagaatctttgagttgttgcagccata 208  Q
    |||||||| || |||||  | |||||||||||||||||||| |||||||| || | |||||||||||| |||| |||||    
T  7580479 agtcgactggatttgattaaacactcatcaaggatatcatcaagcacatacaccgcatctttgagttgctgcaaccata 7580401  T

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