View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12551_high_3 (Length: 584)
Name: NF12551_high_3
Description: NF12551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12551_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 19 - 573
Target Start/End: Original strand, 33422985 - 33423539
Alignment:
| Q |
19 |
aatctgacacaatatacctgattttattcaccacaaaatgttacacttaattaagaactaaccaaccattcattggttcaacaagataataagttaagta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33422985 |
aatctgacacaatatacctgattttattcaccacaaaatgttacacttaattaagaactaaccaaccattcattggttcaacaagataataagttaagta |
33423084 |
T |
|
| Q |
119 |
aaaagtgaaactaattaatcagtaattattcacccgtggaattcccattgttttctaacagtattcgttaagagattgaaatcggcacaacttggaattc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33423085 |
aaaagtgaaactaattaatcagtaattattcacccgtggaattcccattgttttctaacagtattcgttaagagattgaaatcggcacaacttggaattc |
33423184 |
T |
|
| Q |
219 |
catttacacggttataagcacacattattccactagcccgtccttgctcaatgcaactacgaaatggtggttgatatgtgtctgctaaatcttgcaaact |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33423185 |
catttacacggttataagcacacattattccactagcccgtccttgctcaatgcaactacgaaatggtggttgatatgtgtctgctaaatcttgcaaact |
33423284 |
T |
|
| Q |
319 |
cacctgaagaatcataatatgtcatggcgatttagtaaaagtttctcactctgatcttaaatataagcaaaaatgtatatgcaaaaagtacataagtttg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33423285 |
cacctgaagaatcataatatgtcatggcgatttagtaaaagtttctcactctgatcttaaatataagcaaaaatgtatatgcaaaaagtacataagtttg |
33423384 |
T |
|
| Q |
419 |
gaatttggatcaatttcttttgtttatttttaagaccagacctggtaaaaagaggaacataagagcattgtaactaggcatgtgtagttacttacgcgag |
518 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33423385 |
gaatttggatcaatttcttttgcttatatttaagaccagacgtggtaaaaagaggaacataagagcattgtaactaggcatgtgtagttacttacgcgag |
33423484 |
T |
|
| Q |
519 |
catcgaagtgaaagcgattaacacccttccaattgtccaaatcataggcagtgaa |
573 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33423485 |
catcgaagtgaaagcgattaacacccttccaattgtccaaatcataggcagtgaa |
33423539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 7e-29; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 179 - 316
Target Start/End: Complemental strand, 25958183 - 25958046
Alignment:
| Q |
179 |
gtattcgttaagagattgaaatcggcacaacttggaattccatttacacggttataagcacacattattccactagcccgtccttgctcaatgcaactac |
278 |
Q |
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||||| ||||| | |||| |||| ||||| ||||||||||||| |||||||| |||||||||||||||||||||| ||||||||| | ||||||||| |
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| T |
25958183 |
gtattggttaacaaattgtaatctgcacagtttggaattccattgacacggttgtaagcacacattattccactagaccgtccttgtactatgcaactat |
25958084 |
T |
|
| Q |
279 |
gaaatggtggttgatatgtgtctgctaaatcttgcaaa |
316 |
Q |
| |
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||||||| |||||||| || ||||| |||||||||||| |
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| T |
25958083 |
gaaatgggggttgatacgtatctgccaaatcttgcaaa |
25958046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 163 - 326
Target Start/End: Original strand, 25927200 - 25927363
Alignment:
| Q |
163 |
ccattgttttctaacagtattcgttaagagattgaaatcggcacaacttggaattccatttacacggttataagcacacattattccactagcccgtcct |
262 |
Q |
| |
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||||| || |||| |||| || ||||| |||||| |||| ||||| |||||| |||||| |||||||| |||||||||||||||||||| | |||||| |
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| T |
25927200 |
ccatttttgtctagcagttttggttaacagattgtaatctgcacagtttggaactccattgacacggttgtaagcacacattattccactggatcgtcct |
25927299 |
T |
|
| Q |
263 |
tgctcaatgcaactacgaaatggtggttgatatgtgtctgctaaatcttgcaaactcacctgaa |
326 |
Q |
| |
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|| | ||||||||| |||||||||||||||| || || || |||||||||||| | ||||||| |
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| T |
25927300 |
tgtactatgcaactatgaaatggtggttgatacgtatccgccaaatcttgcaaagtaacctgaa |
25927363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 179 - 326
Target Start/End: Original strand, 25887183 - 25887330
Alignment:
| Q |
179 |
gtattcgttaagagattgaaatcggcacaacttggaattccatttacacggttataagcacacattattccactagcccgtccttgctcaatgcaactac |
278 |
Q |
| |
|
||||| ||||| |||||| |||| ||||| |||||| |||||| |||||||| ||||||||||| |||||||||| |||||||| | | ||||||| |
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| T |
25887183 |
gtattggttaaaagattgtaatctgcacagtttggaactccattgacacggttgtaagcacacatgattccactagatcgtccttgtaccacgcaactat |
25887282 |
T |
|
| Q |
279 |
gaaatggtggttgatatgtgtctgctaaatcttgcaaactcacctgaa |
326 |
Q |
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|||||| ||||||||||| ||||| |||||||| ||| | ||||||| |
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| T |
25887283 |
gaaatgagggttgatatgtatctgccaaatcttgtaaagtaacctgaa |
25887330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 179 - 326
Target Start/End: Original strand, 25909867 - 25910014
Alignment:
| Q |
179 |
gtattcgttaagagattgaaatcggcacaacttggaattccatttacacggttataagcacacattattccactagcccgtccttgctcaatgcaactac |
278 |
Q |
| |
|
||||| ||||| |||||| |||| ||||| |||||| |||||| ||||| || |||||||||||||||||||| | |||||||| | | ||||||| |
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| T |
25909867 |
gtattggttaaaagattgtaatctgcacagtttggaactccattgacacgattgtaagcacacattattccactggatcgtccttgtactacgcaactat |
25909966 |
T |
|
| Q |
279 |
gaaatggtggttgatatgtgtctgctaaatcttgcaaactcacctgaa |
326 |
Q |
| |
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|||||| |||||||| || || ||||||||||||||| | ||||||| |
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| T |
25909967 |
gaaatgagggttgatacgtatccgctaaatcttgcaaagtaacctgaa |
25910014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 570
Target Start/End: Original strand, 25887755 - 25887792
Alignment:
| Q |
533 |
cgattaacacccttccaattgtccaaatcataggcagt |
570 |
Q |
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||||| |||||||||||||| ||||||||||||||||| |
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| T |
25887755 |
cgattcacacccttccaattttccaaatcataggcagt |
25887792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 570
Target Start/End: Original strand, 25910362 - 25910399
Alignment:
| Q |
533 |
cgattaacacccttccaattgtccaaatcataggcagt |
570 |
Q |
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||||| |||||||||||||| ||||||||||||||||| |
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| T |
25910362 |
cgattcacacccttccaattttccaaatcataggcagt |
25910399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 399
Target Start/End: Original strand, 43752156 - 43752193
Alignment:
| Q |
362 |
tctcactctgatcttaaatataagcaaaaatgtatatg |
399 |
Q |
| |
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|||| ||||||||||||||||||||||||| ||||||| |
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| T |
43752156 |
tctccctctgatcttaaatataagcaaaaaagtatatg |
43752193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 364 - 392
Target Start/End: Original strand, 11496118 - 11496146
Alignment:
| Q |
364 |
tcactctgatcttaaatataagcaaaaat |
392 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
11496118 |
tcactctgatcttaaatataagcaaaaat |
11496146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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