View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12551_high_4 (Length: 556)
Name: NF12551_high_4
Description: NF12551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12551_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 7 - 497
Target Start/End: Original strand, 47453323 - 47453813
Alignment:
| Q |
7 |
aataacatgaacactcattctgtaagatgctgcagatgtagttttaatacttggaatacctaccacagaataaaaccagattttgtttgtactattagag |
106 |
Q |
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| T |
47453323 |
aataacatgaacactcattctgtaagatgctgcagatgtagttttaatacttggaatacctaccacagaataaaaccagattttgtttgtactattagag |
47453422 |
T |
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| Q |
107 |
ctctcattaagaccaaacaaaactcgatatctgaactacattagtgtatgctaactgggacctgggaatgattgaaggaaacaggtatgggggtatcctg |
206 |
Q |
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| T |
47453423 |
ctctcattaagaccaaacaaaactcaatatctgaaatacattagtgtatgctaactgggacctgggaatgattgaaggaaacaggtatgggggtatcctg |
47453522 |
T |
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| Q |
207 |
gttgtcatgtcggtctttagatgagttaaagaatgccagactaatccccacgatgtggccgcccattgaccaaactaatcttgtttatttccatctattc |
306 |
Q |
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| T |
47453523 |
gttgtcatgtcggtctttagatgagttaaagaatgccagactaacccccacgatgtggccgcccattgaccaaactaatcttgtttatttccatctattc |
47453622 |
T |
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| Q |
307 |
cacacataattctttctgtttataactacatttaattaacacagtgttgagagtcctttgaagtgccaaacatggttttaagttgtgattgcgaatgcgg |
406 |
Q |
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| T |
47453623 |
cacacataattctttctgtttataactacatttaattaacacagtgttgagtgtcctttgaagtgccaaacatggttttaagttgtgattgcgaatgcgg |
47453722 |
T |
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| Q |
407 |
gtattgcagccattgcgacacgcatggcagtctgatgctgctgccgtgcccactacgttgaggttgttgcagacactgccgtaactacaat |
497 |
Q |
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| T |
47453723 |
gtattgcagccattgcgacacgcatggcagtctgatgctgctgccgtgcccactacgttgaggttgttgcagacactgccgtaactacaat |
47453813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 47450153 - 47450221
Alignment:
| Q |
232 |
ttaaagaatgccagactaatccccacgatgtggccgcccattgaccaaactaatcttgtttatttccat |
300 |
Q |
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|||||||||| |||||||||||||||||||||| | |||| |||||| ||||||||||||||||||| |
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| T |
47450153 |
ttaaagaatgttagactaatccccacgatgtggctgtccatggaccaatttaatcttgtttatttccat |
47450221 |
T |
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