View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12551_high_5 (Length: 458)
Name: NF12551_high_5
Description: NF12551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12551_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Original strand, 38180431 - 38180861
Alignment:
| Q |
18 |
cctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaagtcttcgttgctttcgaattttgg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180431 |
cctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaagtcttcgttgctttcgaattttgg |
38180530 |
T |
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| Q |
118 |
gccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180531 |
gccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgagatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtg |
38180630 |
T |
|
| Q |
218 |
acttgtgcgcccaaagaaatgagacgcttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatgaggaagtggtggttttgcg |
317 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180631 |
acttgtgcgcccaaagaaatgagacgtttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatgaggaagtggtggttttgcg |
38180730 |
T |
|
| Q |
318 |
ccatggtagtggtggcttgtgaaaatgcaatagcacgaaccagtagagtaaaggaagtgtgatatgcaacggttatgcatgtatatggatggatagcata |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38180731 |
ccatggtagtggtggcttgtgaaaatgcaatagcacgaaccagtagagtaaaggaagtgtgatatgcaacggttatgaatgtatatggatggatagcata |
38180830 |
T |
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| Q |
418 |
agccaagtgtttttatacaagtgatgtccat |
448 |
Q |
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| T |
38180831 |
agctaagtgtttttatacaagtggtgtccat |
38180861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 38185100 - 38185435
Alignment:
| Q |
18 |
cctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaagtcttcgttgctttcgaattttgg |
117 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||| |||||| ||| ||||||||| || ||||| || |||||||||||||||||||| ||| |
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| T |
38185100 |
cctgtttgccggagagtatgatatttgttagaaattctgagcagtggcacttaagctcggacctgtaggcgatgaagtcttcgttgctttcgaaattttt |
38185199 |
T |
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| Q |
118 |
gccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtg |
217 |
Q |
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|| ||||||| ||| |||||||||||||||||||| ||||| |||||||||| ||||||| |||||| |||||||||||||||||| |||||||||||| |
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| T |
38185200 |
accgtcgtcgtagccatcagagaaggtggcgaaggagaggcctgggatggttggtttgttgataaggccagtgtgtaagtagatagttgtagcaaaagtg |
38185299 |
T |
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| Q |
218 |
acttgtgcgcccaaagaaatgagacgcttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatgaggaagtggtggttttgcg |
317 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38185300 |
acttgtgcgccgaaagaaatgagacgcttggcgaattggagtgcagggtttatgtgaccgtgtagtgggtatgtgatgatgaggaagtggtggttttgcg |
38185399 |
T |
|
| Q |
318 |
ccatggtagtggtggcttgtgaaaatgcaatagcac |
353 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
38185400 |
ccatggtaatggtggcttgtgaaaatgcaatagcac |
38185435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 28 - 348
Target Start/End: Original strand, 38170627 - 38170947
Alignment:
| Q |
28 |
ggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaagtcttcgttgctttcgaattttgggccatcgtcg |
127 |
Q |
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|||||| |||||||||||||||||||| |||| ||| ||| ||| |||| || ||||| ||| | |||||||| || | ||||| | || ||||| |
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| T |
38170627 |
ggagagaatgatatttgtgagaaattctgagccgcgacgcgtaaactcagacatgtaggagacgatgtcttcgtcgccaaaggatttttgaccgtcgtca |
38170726 |
T |
|
| Q |
128 |
tggccgtcagagaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgc |
227 |
Q |
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| |||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||| ||| ||||| ||||||||||||||||||||||| ||||| |
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| T |
38170727 |
tagccgtcagagaaggtggcgaaggagaggcccgggatggttggtttgttgataaggcgactgtataagtggatagtggtagcaaaagtgacttttgcgc |
38170826 |
T |
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| Q |
228 |
ccaaagaaatgagacgcttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatgaggaagtggtggttttgcgccatggtagt |
327 |
Q |
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||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38170827 |
ccaaagaaatgagacgcttggtgaattggagggcagggtttatgtgaccttgtagtgggtatgttatgatgaggaagtggtggttttgcgccatggtagt |
38170926 |
T |
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| Q |
328 |
ggtggcttgtgaaaatgcaat |
348 |
Q |
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||||| ||||||||||||||| |
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| T |
38170927 |
ggtggattgtgaaaatgcaat |
38170947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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