View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12551_high_6 (Length: 442)

Name: NF12551_high_6
Description: NF12551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12551_high_6
NF12551_high_6
[»] chr2 (6 HSPs)
chr2 (19-109)||(41445419-41445509)
chr2 (383-426)||(41445329-41445372)
chr2 (96-155)||(41453436-41453494)
chr2 (290-335)||(13697098-13697143)
chr2 (290-335)||(14242648-14242693)
chr2 (290-335)||(14945869-14945914)
[»] chr4 (14 HSPs)
chr4 (229-335)||(51579324-51579432)
chr4 (244-335)||(5817467-5817558)
chr4 (257-335)||(20107114-20107194)
chr4 (248-335)||(17044007-17044095)
chr4 (287-335)||(39631268-39631316)
chr4 (214-335)||(51579585-51579708)
chr4 (290-335)||(25164604-25164649)
chr4 (290-335)||(36851231-36851276)
chr4 (290-335)||(37605824-37605869)
chr4 (290-335)||(43749096-43749141)
chr4 (290-335)||(45996027-45996072)
chr4 (290-335)||(55281212-55281257)
chr4 (248-335)||(24059224-24059311)
chr4 (226-333)||(26719970-26720077)
[»] chr3 (5 HSPs)
chr3 (214-337)||(33288134-33288260)
chr3 (249-335)||(23004760-23004846)
chr3 (290-335)||(38247802-38247847)
chr3 (290-335)||(50989207-50989252)
chr3 (290-335)||(51092339-51092384)
[»] chr7 (7 HSPs)
chr7 (214-333)||(47480069-47480188)
chr7 (214-332)||(11752604-11752724)
chr7 (226-335)||(28713681-28713792)
chr7 (226-335)||(38349526-38349637)
chr7 (214-333)||(38754951-38755071)
chr7 (290-335)||(46576375-46576420)
chr7 (239-333)||(31741049-31741145)
[»] chr5 (3 HSPs)
chr5 (226-335)||(43100275-43100386)
chr5 (290-335)||(13988251-13988296)
chr5 (290-335)||(36890381-36890426)
[»] chr8 (2 HSPs)
chr8 (226-335)||(11904857-11904968)
chr8 (211-305)||(10592010-10592106)
[»] chr1 (9 HSPs)
chr1 (220-335)||(7178174-7178289)
chr1 (214-335)||(1994957-1995080)
chr1 (290-336)||(29637343-29637389)
chr1 (290-335)||(1673373-1673418)
chr1 (298-335)||(13276605-13276642)
chr1 (290-335)||(27325761-27325806)
chr1 (226-333)||(29731194-29731303)
chr1 (290-335)||(44797599-44797644)
chr1 (248-335)||(26040974-26041061)
[»] chr6 (3 HSPs)
chr6 (281-335)||(34792774-34792829)
chr6 (297-335)||(1244696-1244734)
chr6 (290-335)||(14314119-14314164)


Alignment Details
Target: chr2 (Bit Score: 79; Significance: 9e-37; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 41445509 - 41445419
Alignment:
Q  19 gtaacagcatttttagtattgtggagaagcaactaacagaaagatgggattagtattaggtaacggattgtcttgccttcacgcgggaatg 109  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  41445509 gtaacaacatttttagtattgtggagaagcaactaacagaaagatgggattggtattaggtaacggattgtcttgtcttcacgcgggaatg 41445419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 426
Target Start/End: Complemental strand, 41445372 - 41445329
Alignment:
Q  383 cttttctataatatagtacttcaactatatcatttcatgaagca 426  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  41445372 cttttctataatatagtactttaactatatcatttcatgaagca 41445329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 41453494 - 41453436
Alignment:
Q  96 ttcacgcgggaatgacgttgtggacttctaacattttcctccttttcccactaattttgt 155  Q
    |||||||||||||||| ||||||||||| |||||||| |||| ||||||||||| |||||    
T  41453494 ttcacgcgggaatgactttgtggacttc-aacattttgctccgtttcccactaactttgt 41453436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 13697098 - 13697143
Alignment:
Q  290 gggtgtgcaagtggtacataccacttaagttggtctatgtatcact 335  Q
    |||||| |||||||||||| |||| |||| ||||||||||||||||    
T  13697098 gggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 13697143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 14242648 - 14242693
Alignment:
Q  290 gggtgtgcaagtggtacataccacttaagttggtctatgtatcact 335  Q
    |||||| || |||||||||||||| |||| ||||||||||||||||    
T  14242648 gggtgtacaggtggtacataccacctaagatggtctatgtatcact 14242693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 14945869 - 14945914
Alignment:
Q  290 gggtgtgcaagtggtacataccacttaagttggtctatgtatcact 335  Q
    |||||| |||||||||||| |||| |||| ||||||||||||||||    
T  14945869 gggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 14945914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 335
Target Start/End: Complemental strand, 51579432 - 51579324
Alignment:
Q  229 gacaaaaaaggtgagtttgttgtgtgtg-gggaaccacatagatacatgttacaattatatg-gggtgtgcaagtggtacataccacttaagttggtcta 326  Q
    ||||| ||| |||||||| |||| |||| ||||||||||| || |||||| |||||| |||| |||||| |||||||||||| |||| |||| |||||||    
T  51579432 gacaataaatgtgagttttttgtatgtgtgggaaccacatggacacatgtcacaattgtatgtgggtgtacaagtggtacatgccacctaaggtggtcta 51579333  T
Q  327 tgtatcact 335  Q
    |||||||||    
T  51579332 tgtatcact 51579324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 335
Target Start/End: Original strand, 5817467 - 5817558
Alignment:
Q  244 tttgttgtgtgtggggaaccacatagatacatgttacaattatatg-gggtgtgcaagtggtacataccacttaagttggtctatgtatcact 335  Q
    |||| |||||||||||| |||||| || |||||| |||||| | || |||||| |||||||||||| |||| |||| ||||||||||||||||    
T  5817467 tttggtgtgtgtgggga-ccacatggacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccacctaagatggtctatgtatcact 5817558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 257 - 335
Target Start/End: Complemental strand, 20107194 - 20107114
Alignment:
Q  257 gggaaccacatagatacatgttacaattatatg--gggtgtgcaagtggtacataccacttaagttggtctatgtatcact 335  Q
    ||||||||||| || |||||| |||||| | ||  |||||| |||||||||||| |||| |||| ||||||||||||||||    
T  20107194 gggaaccacatggacacatgtcacaattgtgtgcggggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 20107114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 335
Target Start/End: Complemental strand, 17044095 - 17044007
Alignment:
Q  248 ttgtgtgtggggaaccacatagatacatgttacaattatatg-gggtgtgcaagtggtacataccacttaagttggtctatgtatcact 335  Q
    |||||||||||||||||||  || || ||| | |||| | || |||||| |||||||||||| |||| |||| ||||||||||||||||    
T  17044095 ttgtgtgtggggaaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 17044007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 39631268 - 39631316
Alignment:
Q  287 atggggtgtgcaagtggtacataccacttaagttggtctatgtatcact 335  Q
    ||||||||| |||||||||||| |||| |||| ||||||||||||||||    
T  39631268 atggggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 39631316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 335
Target Start/End: Complemental strand, 51579708 - 51579585
Alignment:
Q  214 tgagagtatgtaagagacaaaaaaggtgag-tttgttgtgtgtg-gggaaccacatagatacatgttacaattata-tggggtgtgcaagtggtacatac 310  Q
    ||||||| |||||||||||| ||| ||||| ||| |||| |||| ||||| ||||| || |||||| |||||| || | |||||| |||||||||||| |    
T  51579708 tgagagtgtgtaagagacaataaatgtgagtttttttgtatgtgtgggaatcacatggacacatgtcacaattgtatttgggtgtacaagtggtacatgc 51579609  T
Q  311 cacttaagttggtctatgtatcact 335  Q
    ||| |||| |||||| |||||||||    
T  51579608 cacctaaggtggtct-tgtatcact 51579585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 25164604 - 25164649
Alignment:
Q  290 gggtgtgcaagtggtacataccacttaagttggtctatgtatcact 335  Q
    |||||| |||||||||||| |||| |||| ||||||||||||||||    
T  25164604 gggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 25164649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 36851276 - 36851231
Alignment:
Q  290 gggtgtgcaagtggtacataccacttaagttggtctatgtatcact 335  Q
    |||||| |||||||||||| ||||||||| ||||||||| ||||||    
T  36851276 gggtgtacaagtggtacatgccacttaaggtggtctatgcatcact 36851231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 37605824 - 37605869
Alignment:
Q  290 gggtgtgcaagtggtacataccacttaagttggtctatgtatcact 335  Q
    |||||| |||||||||||| |||| |||| ||||||||||||||||    
T  37605824 gggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 37605869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 43749141 - 43749096
Alignment:
Q  290 gggtgtgcaagtggtacataccacttaagttggtctatgtatcact 335  Q
    |||||| |||||||||||| |||| |||| ||||||||||||||||    
T  43749141 gggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 43749096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 45996027 - 45996072
Alignment:
Q  290 gggtgtgcaagtggtacataccacttaagttggtctatgtatcact 335  Q
    |||||| |||||||||||| |||| |||| ||||||||||||||||    
T  45996027 gggtgtacaagtggtacatgccacctaagatggtctatgtatcact 45996072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 55281257 - 55281212
Alignment:
Q  290 gggtgtgcaagtggtacataccacttaagttggtctatgtatcact 335  Q
    |||||| |||||||||||| |||| |||| ||||||||||||||||    
T  55281257 gggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 55281212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 335
Target Start/End: Original strand, 24059224 - 24059311
Alignment:
Q  248 ttgtgtgtggggaaccacatagatacatgttacaattatatg-gggtgtgcaagtggtacataccacttaagttggtctatgtatcact 335  Q
    ||||||||||| |||||||| || |||||| |||||| |||| |||||| ||| || ||||| |||  |||| ||||||||||||||||    
T  24059224 ttgtgtgtggg-aaccacatggacacatgtcacaattgtatgtgggtgtacaaatgatacatgccatctaaggtggtctatgtatcact 24059311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 333
Target Start/End: Original strand, 26719970 - 26720077
Alignment:
Q  226 agagacaaaaaaggtgagtttgttgtgtgtggggaaccacatagatacatgttacaattatatg-gggtgtgcaagtggtacataccacttaagttggtc 324  Q
    ||||||| |||| ||||||||  || ||||||||| ||||| ||| |||||||||||||  ||| ||||||  ||||||||||  |||| |||| ||||     
T  26719970 agagacacaaaatgtgagttttgtgcgtgtgggga-ccacaaagacacatgttacaattgaatgtgggtgtagaagtggtacacgccacctaaggtggtt 26720068  T
Q  325 tatgtatca 333  Q
    |||||||||    
T  26720069 tatgtatca 26720077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 214 - 337
Target Start/End: Complemental strand, 33288260 - 33288134
Alignment:
Q  214 tgagagtatgtaagagacaaaaaaggtgagtttgtt-gtgtgtggg-gaaccacatagatacatgttacaattatatg-gggtgtgcaagtggtacatac 310  Q
    ||||| ||||| |||||||| ||| |||||||| || ||||||| | | |||||||||| |||| | |||||| | || |||||| ||||||||||||||    
T  33288260 tgagaatatgtgagagacaataaatgtgagtttttttgtgtgtgtgaggaccacatagacacatatcacaattgtgtgtgggtgtacaagtggtacatac 33288161  T
Q  311 cacttaagttggtctatgtatcacttt 337  Q
    ||| |||| ||||||||||||||||||    
T  33288160 cacctaaggtggtctatgtatcacttt 33288134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 23004846 - 23004760
Alignment:
Q  249 tgtgtgtggggaaccacatagatacatgttacaattatatg-gggtgtgcaagtggtacataccacttaagttggtctatgtatcact 335  Q
    |||||||||||| ||||||  |||||||| |||||| | || |||||| |||||||||||| |||| |||| ||||||||||||||||    
T  23004846 tgtgtgtgggga-ccacatgaatacatgtcacaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 23004760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 38247847 - 38247802
Alignment:
Q  290 gggtgtgcaagtggtacataccacttaagttggtctatgtatcact 335  Q
    |||||| |||||||||||| |||| |||| ||||||||||||||||    
T  38247847 gggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 38247802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 50989252 - 50989207
Alignment:
Q  290 gggtgtgcaagtggtacataccacttaagttggtctatgtatcact 335  Q
    |||||| |||||||||||| |||| |||| ||||||||||||||||    
T  50989252 gggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 50989207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 51092384 - 51092339
Alignment:
Q  290 gggtgtgcaagtggtacataccacttaagttggtctatgtatcact 335  Q
    |||||| |||||||||||| |||| |||| ||||||||||||||||    
T  51092384 gggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 51092339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 333
Target Start/End: Original strand, 47480069 - 47480188
Alignment:
Q  214 tgagagtatgtaagagacaaaaaaggtgagtttgttgtgtgtg-gggaaccacatagatacatgttacaattatatggggtgtgcaagtggtacatacca 312  Q
    ||||||| |||||||||||| ||| || ||||| || |||||| |||||||| || || |||||| |||||| ||| |||||| ||| |||||||| |||    
T  47480069 tgagagtgtgtaagagacaataaatgtaagtttttt-tgtgtgtgggaaccatatggacacatgtcacaattgtattgggtgtacaaatggtacatgcca 47480167  T
Q  313 cttaagttggtctatgtatca 333  Q
    | |||| ||||||||||||||    
T  47480168 cctaaggtggtctatgtatca 47480188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 332
Target Start/End: Complemental strand, 11752724 - 11752604
Alignment:
Q  214 tgagagtatgtaagagacaaaaaaggtgagtttgttgtgtgtg-gggaaccacatagatacatgttacaattatatg-gggtgtgcaagtggtacatacc 311  Q
    ||||||| ||| ||||||| ||||||||||||| || |||||| ||| ||||| |  | |||||| |||||||||||  ||||| |||||| ||||| ||    
T  11752724 tgagagtgtgtgagagacacaaaaggtgagttttttatgtgtgtggggaccacgtgaacacatgtcacaattatatgtaggtgtacaagtgatacatgcc 11752625  T
Q  312 acttaagttggtctatgtatc 332  Q
    || |||| |||||||||||||    
T  11752624 acctaaggtggtctatgtatc 11752604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 335
Target Start/End: Complemental strand, 28713792 - 28713681
Alignment:
Q  226 agagacaaaaaaggtgagtttgttgtgtgtg--gggaaccacatagatacatgttacaattatatg-gggtgtgcaagtggtacataccacttaagttgg 322  Q
    ||||||| ||||| ||||||| || ||||||  |||||| |||| || |||||| ||||||||||| |||||| ||||||||| || |||| |||| |||    
T  28713792 agagacacaaaagatgagtttcttatgtgtgtagggaac-acatggacacatgtcacaattatatgtgggtgtacaagtggtatatgccacctaaggtgg 28713694  T
Q  323 tctatgtatcact 335  Q
    | |||||||||||    
T  28713693 tttatgtatcact 28713681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 335
Target Start/End: Original strand, 38349526 - 38349637
Alignment:
Q  226 agagacaaaaaaggtgagtttgttgtgtgtg--gggaaccacatagatacatgttacaattatatg-gggtgtgcaagtggtacataccacttaagttgg 322  Q
    ||||||| ||||| ||||||| || ||||||  |||||| |||| || |||||| ||||||||||| |||||| ||||||||| || |||| |||| |||    
T  38349526 agagacacaaaagatgagtttcttatgtgtgtagggaac-acatggacacatgtcacaattatatgtgggtgtacaagtggtatatgccacctaagatgg 38349624  T
Q  323 tctatgtatcact 335  Q
    | |||||||||||    
T  38349625 tttatgtatcact 38349637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 333
Target Start/End: Original strand, 38754951 - 38755071
Alignment:
Q  214 tgagagtatgtaagagacaaaaaaggtgagtttgtt-gtgtgtggggaaccacatagatacatgttacaattatatg-gggtgtgcaagtggtacatacc 311  Q
    ||||||| ||| |||||||| ||| |||||||| || ||||||||||| | |||| || |||||| | |||||| |  |||||| |||||||||||| ||    
T  38754951 tgagagtgtgtgagagacaataaatgtgagtttttttgtgtgtggggatc-acatggacacatgtcataattatgtatgggtgttcaagtggtacatgcc 38755049  T
Q  312 acttaagttggtctatgtatca 333  Q
    || |||| ||||||||||||||    
T  38755050 acctaaggtggtctatgtatca 38755071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 46576375 - 46576420
Alignment:
Q  290 gggtgtgcaagtggtacataccacttaagttggtctatgtatcact 335  Q
    |||||| |||||||||||| |||| |||| ||||||||||||||||    
T  46576375 gggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 46576420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 333
Target Start/End: Complemental strand, 31741145 - 31741049
Alignment:
Q  239 gtgagtttgttgtgtgtg-gggaaccacatagatacatgttacaattatatg-gggtgtgcaagtggtacataccacttaagttggtctatgtatca 333  Q
    |||||||| ||||||||| ||| | |||||||| |||||| |||||| | |  ||||||  ||||||||||| |||| |||| ||||||||||||||    
T  31741145 gtgagtttcttgtgtgtgtggggagcacatagacacatgtcacaattgtgtatgggtgtataagtggtacatgccacctaaggtggtctatgtatca 31741049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 335
Target Start/End: Original strand, 43100275 - 43100386
Alignment:
Q  226 agagacaaaaaaggtgagtttgttgtgtgtgggga-accacatagatacatgttacaattatatg-gggtgtgcaagtggtacataccacttaagttggt 323  Q
    ||||||| ||||| ||| ||| |||||||||  || ||||||| || |||||| ||||||||||| |||||| ||||||||| ||||||| |||| ||||    
T  43100275 agagacacaaaagatgaatttcttgtgtgtgtagagaccacatggacacatgtcacaattatatgtgggtgtacaagtggtatataccacctaagatggt 43100374  T
Q  324 ctatgtatcact 335  Q
     |||||||||||    
T  43100375 ttatgtatcact 43100386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 13988296 - 13988251
Alignment:
Q  290 gggtgtgcaagtggtacataccacttaagttggtctatgtatcact 335  Q
    |||||| |||||||||||| |||| |||| ||||||||||||||||    
T  13988296 gggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 13988251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 36890426 - 36890381
Alignment:
Q  290 gggtgtgcaagtggtacataccacttaagttggtctatgtatcact 335  Q
    |||||| |||||||||||| |||| |||| ||||||||||||||||    
T  36890426 gggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 36890381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 335
Target Start/End: Complemental strand, 11904968 - 11904857
Alignment:
Q  226 agagacaaaaaaggtgagtttgttgtgtgtgg-ggaaccacatagatacatgttacaattatatg-gggtgtgcaagtggtacataccacttaagttggt 323  Q
    ||||||| ||||| ||||||| ||||||| |  || ||||||| || |||||| ||||||||||| |||||| ||||||||| || |||| |||| ||||    
T  11904968 agagacacaaaagatgagtttcttgtgtgagtagggaccacatggacacatgtcacaattatatgtgggtgtacaagtggtatatgccacctaaggtggt 11904869  T
Q  324 ctatgtatcact 335  Q
     |||||||||||    
T  11904868 ttatgtatcact 11904857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 305
Target Start/End: Complemental strand, 10592106 - 10592010
Alignment:
Q  211 atatgagagtatgtaagagacaaaaaaggtgagtttgttgtgtgtgggga-accacatagatacatgttacaattatatg-gggtgtgcaagtggta 305  Q
    |||||||||| | | ||||||| ||||| ||||||| |||||||||  || ||||||| || |||||| ||||||||||| |||||| |||||||||    
T  10592106 atatgagagtgtttgagagacacaaaagatgagtttcttgtgtgtgtagagaccacatggacacatgtcacaattatatgtgggtgtacaagtggta 10592010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 335
Target Start/End: Original strand, 7178174 - 7178289
Alignment:
Q  220 tatgtaagagacaaaaaaggtgagtttgttgtgtgtggggaaccacatagatacatgttacaattatatg-gggtgtgcaagtggtacataccacttaag 318  Q
    ||||| ||||||| |||  |||||||| |||||||| | || ||||||||| || ||| |||||| |||| |||||| ||| ||||||||  ||| ||||    
T  7178174 tatgtgagagacataaacagtgagttttttgtgtgtcgaga-ccacatagacacttgtcacaattgtatgtgggtgtacaaatggtacatgtcacctaag 7178272  T
Q  319 ttggtctatgtatcact 335  Q
     ||||||||||||||||    
T  7178273 gtggtctatgtatcact 7178289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 335
Target Start/End: Complemental strand, 1995080 - 1994957
Alignment:
Q  214 tgagagtatgtaagagacaaaaaaggtgagtttgtt-gtgtgtggggaaccacatagatacatgttacaattatatg-gggtgtgcaagtggtacatacc 311  Q
    ||||||| ||| |||||||| | | |||||||| || |||||||| | |||||| ||| || ||| | |||| | || |||||| |||||||||||| ||    
T  1995080 tgagagtgtgtgagagacaatacatgtgagtttttttgtgtgtggaggaccacaaagacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgcc 1994981  T
Q  312 acttaagttggtctatgtatcact 335  Q
    || |||| ||||||||||||||||    
T  1994980 acctaaggtggtctatgtatcact 1994957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 29637343 - 29637389
Alignment:
Q  290 gggtgtgcaagtggtacataccacttaagttggtctatgtatcactt 336  Q
    |||||| |||||||||||| |||| |||| |||||||||||||||||    
T  29637343 gggtgtacaagtggtacatgccacctaagatggtctatgtatcactt 29637389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 1673418 - 1673373
Alignment:
Q  290 gggtgtgcaagtggtacataccacttaagttggtctatgtatcact 335  Q
    |||||| |||||||||||| |||| |||| ||||||||||||||||    
T  1673418 gggtgtacaagtggtacatgccacctaagatggtctatgtatcact 1673373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 335
Target Start/End: Original strand, 13276605 - 13276642
Alignment:
Q  298 aagtggtacataccacttaagttggtctatgtatcact 335  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  13276605 aagtggtacataccacctaaggtggtctatgtatcact 13276642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 27325761 - 27325806
Alignment:
Q  290 gggtgtgcaagtggtacataccacttaagttggtctatgtatcact 335  Q
    |||||| |||||||||||| |||| |||| ||||||||||||||||    
T  27325761 gggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 27325806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 333
Target Start/End: Complemental strand, 29731303 - 29731194
Alignment:
Q  226 agagacaaaaaaggtgagtttgttgtgtgtgg-ggaaccacatagatacatgttacaattatatg-gggtgtgcaagtggtacataccacttaagttggt 323  Q
    ||||||| ||||| ||| ||| |||||||||  || ||||||| || |||||| ||||||||||| |||||| | ||||||| || |||| |||| ||||    
T  29731303 agagacacaaaagatgaatttcttgtgtgtgtagggaccacatggacacatgtcacaattatatgtgggtgtactagtggtatatgccacctaaggtggt 29731204  T
Q  324 ctatgtatca 333  Q
     |||||||||    
T  29731203 ttatgtatca 29731194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 44797599 - 44797644
Alignment:
Q  290 gggtgtgcaagtggtacataccacttaagttggtctatgtatcact 335  Q
    |||||| |||||||||||| |||| |||| ||||||||||||||||    
T  44797599 gggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 44797644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 335
Target Start/End: Complemental strand, 26041061 - 26040974
Alignment:
Q  248 ttgtgtgtggggaaccacatagatacatgttacaattatatg-gggtgtgcaagtggtacataccacttaagttggtctatgtatcact 335  Q
    ||||||||||||| |||| | || |||||| |||||| |||| |||||| |||||||||||| |||| |||| |||| | |||||||||    
T  26041061 ttgtgtgtgggga-ccacgtggacacatgtcacaattgtatgtgggtgtacaagtggtacatgccacctaaggtggtttgtgtatcact 26040974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 335
Target Start/End: Original strand, 34792774 - 34792829
Alignment:
Q  281 aattatatg-gggtgtgcaagtggtacataccacttaagttggtctatgtatcact 335  Q
    ||||||||| |||||| |||||||||||| |||| |||| ||||||||||||||||    
T  34792774 aattatatgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 34792829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 335
Target Start/End: Original strand, 1244696 - 1244734
Alignment:
Q  297 caagtggtacataccacttaagttggtctatgtatcact 335  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  1244696 caagtggtacatgccacttaaggtggtctatgtatcact 1244734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 14314119 - 14314164
Alignment:
Q  290 gggtgtgcaagtggtacataccacttaagttggtctatgtatcact 335  Q
    |||||| |||||||||||| |||| |||| ||||||||||||||||    
T  14314119 gggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 14314164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University