View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12551_high_7 (Length: 413)
Name: NF12551_high_7
Description: NF12551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12551_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 384
Target Start/End: Original strand, 8940018 - 8940383
Alignment:
| Q |
19 |
cgaattgacgaatttgattgagtaaagataatcggtatttttcaaatgaaaattttgagaatcagagaacaaaatttcttcgatttcagagtatatgaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8940018 |
cgaattgacgaatttgattgagtaaagataatcggtatttttcaaatgaaaattttgagaatcagagaacaaaatttctttgatttcagagtatatgaag |
8940117 |
T |
|
| Q |
119 |
gcctaattatattactattgatagaaatgtctgctttatttataggtactggaaattatttagtaacaaaactctcaattttgtgagaaatatagagatc |
218 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8940118 |
gcctaattatattactattgatagaaacgtctgctttatttataggtactggaaattatttagtaacaaaactctcaattttgtgagaaatatagagatc |
8940217 |
T |
|
| Q |
219 |
tctactcatagattcggattccctgcagtggaaaaaataagtatttacacgtagtttttgatcttggccgttaatttaagattgaacagtttatattaca |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8940218 |
tctactcatagattcggattccctgcagtggaataaataagtatttacacgtagtttttgatcttggccgttaatttaagattgaacagtttatcttaca |
8940317 |
T |
|
| Q |
319 |
caataacaaaatcaatttagaacgatattgacgttaatccctcgactgagttgattagtgtatttg |
384 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8940318 |
caataacaaaatcaatttagaatgatattgacgttaatccctcgactgagttgattagtgtatttg |
8940383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 273 - 347
Target Start/End: Original strand, 8550838 - 8550912
Alignment:
| Q |
273 |
tttttgatcttggccgttaatttaagattgaacagtttatattacacaataacaaaatcaatttagaacgatatt |
347 |
Q |
| |
|
||||||||||||||||||||| | |||| |||||||| ||||||| |||||| |||||||||| ||||||||| |
|
|
| T |
8550838 |
tttttgatcttggccgttaatatgagatcagacagtttaaattacacgataacataatcaatttaaaacgatatt |
8550912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 337
Target Start/End: Original strand, 23713442 - 23713508
Alignment:
| Q |
271 |
agtttttgatcttggccgttaatttaagattgaacagtttatattacacaataacaaaatcaattta |
337 |
Q |
| |
|
|||||||||||| |||||||| | |||||| |||||| | |||||||||||||||||||| |||| |
|
|
| T |
23713442 |
agtttttgatctcaaccgttaatctgagattggacagttcagattacacaataacaaaatcagttta |
23713508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University