View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12551_low_11 (Length: 400)
Name: NF12551_low_11
Description: NF12551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12551_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 14 - 384
Target Start/End: Complemental strand, 42439253 - 42438884
Alignment:
| Q |
14 |
tcactgtagttaaggtttctgtttgtttggaatttggattgatgtgctatataagtatttgtattttagtagcaatagcaacaattannnnnnnnnnnnn |
113 |
Q |
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| T |
42439253 |
tcactgtagttaaagtttctgtttgtttggagtttggattgatgtgctatataagtatttgtattttagtagcaatagcaacaattatttttgttttttt |
42439154 |
T |
|
| Q |
114 |
nnctctctattttaaaagagcaattattgatgggtaaaaattacttatctttgaacatgatcataataacatattcccttaaaaaagcagtaatacattt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42439153 |
ttctctctattttaaaagagcaattattgatgggtaaaaataacttatctttgaacatgatcataataacatattcccttaaaaaagtagtaatacattt |
42439054 |
T |
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| Q |
214 |
ttatcccgtttatnnnnnnnnnggttgtactcgtgtcgcttaattttgctcatatattaagttagggtttatgtccgcgggtcatacgcatataagggat |
313 |
Q |
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|| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||| |
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| T |
42439053 |
tttacccgtttataaaaaaaaag-ttgtactcgtgtcgcttaattttgctcatatattaagttagggtttatgtccacggatcatacgcatacaagggat |
42438955 |
T |
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| Q |
314 |
gttaatttacatcaatctaaaatcactaagtaaattagcaacctaaaaccacttgattttaactaaaaaac |
384 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||| |
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| T |
42438954 |
gttaatttacatcaatctaaaatcactaagtaaactagcaacctacaaacacttgattttaactaaaaaac |
42438884 |
T |
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