View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12551_low_12 (Length: 400)
Name: NF12551_low_12
Description: NF12551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12551_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 5 - 378
Target Start/End: Complemental strand, 12200512 - 12200141
Alignment:
| Q |
5 |
tgatgctttaatcagccacttgaataagccatagacaaaattaagacatagcataccgagaatgggcacacgcaaggcagaagacggagtcaatcgaact |
104 |
Q |
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| T |
12200512 |
tgatgctttaatcagccacttgaataagccatagacaaaattaagacatagcataccgagaatgggcacacgcaaggcagaagacggagtcaatcgaact |
12200413 |
T |
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| Q |
105 |
atggagacaaatgcatacacaaaggtcactgtgaacaagacattccacaaaattgccggtaagagaagaaaacaggcctgcccaaagcttagtagtatgg |
204 |
Q |
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| T |
12200412 |
atggagacaaatgcatagacaaaggtcactgtgaacaagacattccacaaaattgccggtaagagaagaaaacaggtctgcccaaagcttagtagtatgg |
12200313 |
T |
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| Q |
205 |
tctctttctgataaggaagacccaaaacggacatcagtgttacttgagctatagatgaaaaaattgccgctgccagccattgttctttgtttagctgcat |
304 |
Q |
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| T |
12200312 |
tctctttctgataaggaagacccaaaacggacatcagtgttacttgagctatagatgaaaaaattgccactgccagccattgttatttgtttagctgcat |
12200213 |
T |
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| Q |
305 |
ttttggtttgcctgtacattttagagaaacctcgtattatttgtagacatttttacagaatggaaaaatgtatc |
378 |
Q |
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| T |
12200212 |
ttttggtttgcctgtacattttagagaaacctc--attatttgtagacatttttacagaatggaaaaatgtatc |
12200141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 263
Target Start/End: Original strand, 43025442 - 43025567
Alignment:
| Q |
138 |
aacaagacattccacaaaattgccggtaagagaagaaaacaggcctgcccaaagcttagtagtatggtctctttctgataaggaagacccaaaacggaca |
237 |
Q |
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| T |
43025442 |
aacaagacattccataaaattggctctaagagatgaaaacaagcctgcacaaagcttagttgtatggtcgccttttgatgaggacaacccaaaacataca |
43025541 |
T |
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| Q |
238 |
tcagtgttacttgagctatagatgaa |
263 |
Q |
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| T |
43025542 |
tcaatcctacttgagcaatcgatgaa |
43025567 |
T |
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