View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12551_low_13 (Length: 399)
Name: NF12551_low_13
Description: NF12551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12551_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 391
Target Start/End: Original strand, 52969078 - 52969454
Alignment:
| Q |
18 |
cttaccctactcaatatttaacatatattctcagcatactctttattacannnnnnnnnn-cttctttcttataagtccttactcgtctct--atcaaca |
114 |
Q |
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| T |
52969078 |
cttaccctactcaatatttaacatttattctcagcatactctttattacattttttttcttcttctttcttataagtccttactcggctctttatcaaca |
52969177 |
T |
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| Q |
115 |
attgattgaatttctcgatcaatcgttgtgttttttgtttgtttatcttgttactttagaaccaataagagctgataagtcaactttggtttgatttgat |
214 |
Q |
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| T |
52969178 |
attgattgaatttctcgatcaatcgttgtgttttttgtttgtttatcttgttactttagaaccaataagagctgataagtcaactttggtttgatttgat |
52969277 |
T |
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| Q |
215 |
tccaaacaagaggaaccattttggataaggagagcagcatgggaaaaagttcaaagccacgtggggtcaatgtgtacttttttgtaacaattatttaggg |
314 |
Q |
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| T |
52969278 |
tccaaacaagaggaaccattttggataaggagagcagcatgggaaaaagttcaaagccacgtggggtcaatgtgtacttttttgcaacaattatttaggg |
52969377 |
T |
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| Q |
315 |
aaaaaactattagtcaatcaccttttaacacgtgttaaaagtctaagtatttcaaccactcacaatcaatctgtgct |
391 |
Q |
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| T |
52969378 |
aaaaaactattagtcaatcaccttttaacacgtgttaaaagtctaagtattccaaccactcacaatcaatctgtgct |
52969454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 189 - 290
Target Start/End: Original strand, 52964136 - 52964234
Alignment:
| Q |
189 |
ataagtcaactttggtttgatttgattccaaacaagaggaaccattttggataaggagagcagcatgggaaaaagttcaaagccacgtggggtcaatgtg |
288 |
Q |
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| T |
52964136 |
ataagtcaactttggtttgatttgattccaaacaagaagaacgattttggataag--gagcagcatgggaaaaagttcatag-cacgtggggtcaatgtg |
52964232 |
T |
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