View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12551_low_17 (Length: 361)

Name: NF12551_low_17
Description: NF12551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12551_low_17
NF12551_low_17
[»] chr4 (7 HSPs)
chr4 (19-346)||(31733173-31733500)
chr4 (72-345)||(31746075-31746348)
chr4 (75-341)||(31740735-31741000)
chr4 (142-242)||(31725123-31725223)
chr4 (139-242)||(31717898-31718001)
chr4 (128-242)||(31702568-31702682)
chr4 (126-236)||(31697460-31697570)
[»] chr8 (8 HSPs)
chr8 (128-242)||(23560246-23560360)
chr8 (172-236)||(15703515-15703579)
chr8 (172-240)||(15805179-15805247)
chr8 (172-236)||(15697126-15697190)
chr8 (172-236)||(15711797-15711861)
chr8 (172-236)||(15722347-15722411)
chr8 (172-239)||(15813020-15813087)
chr8 (178-239)||(15764204-15764265)
[»] chr3 (7 HSPs)
chr3 (172-241)||(3123009-3123078)
chr3 (172-241)||(3103478-3103547)
chr3 (175-242)||(20341908-20341975)
chr3 (169-242)||(5855841-5855914)
chr3 (172-240)||(3080668-3080736)
chr3 (172-240)||(3095105-3095173)
chr3 (172-241)||(3132770-3132841)
[»] chr1 (1 HSPs)
chr1 (169-243)||(21936639-21936713)
[»] chr2 (1 HSPs)
chr2 (175-243)||(2716885-2716953)


Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 346
Target Start/End: Complemental strand, 31733500 - 31733173
Alignment:
Q  19 gttgatgtattatttgtaagattagaaattgacataaatacataacttgccatttgccaagtacttacttggccaacaaggttaagagtaccatctgtgt 118  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31733500 gttgatatattatttgtaagattagaaattgacataaatacataacttgccatttgccaagtacttacttggccaacaaggttaagagtaccatctgtgt 31733401  T
Q  119 gataatatgctctatttcttttgccacatataatctccaataataaaatgccgaagctaaaaacatcagatttcactgaaaacaatccatcaacagcata 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||    
T  31733400 gataatatgctctatttcttttgccacatataatctccaataataaaatgccgaagctaaaaacgtcagatttcaccgaaaataatccatcaacagcata 31733301  T
Q  219 ttctggtgccatgtatccactgcatatgaattcattacagcacattagaatattcacatccatgtaagttaatatacggtattggacatttgttagatac 318  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31733300 ttctggtgccatgtacccactgcatatgaatccattacagcacattataatattcacatccatgtaagttaatatacggtattggacatttgttagatac 31733201  T
Q  319 tcactaagttccaattattctctctgtg 346  Q
    ||||||||||||||||||||||| ||||    
T  31733200 tcactaagttccaattattctctttgtg 31733173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 72 - 345
Target Start/End: Complemental strand, 31746348 - 31746075
Alignment:
Q  72 ttgccaagtacttacttggccaacaaggttaagagtaccatctgtgtgataatatgctctatttcttttgccacatataatctccaataataaaatgccg 171  Q
    |||||| ||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  31746348 ttgccaggtacttacttggcgaacaaggttaagagtctcatctgtgtgataatatgctctatttcttttgccacagataatctccaataataaaattccg 31746249  T
Q  172 aagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatccactgcatatgaattcattacagcacattagaatat 271  Q
    |||||| |||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||  ||||||| || ||||||||||    
T  31746248 aagctataaacgtcagacttcactgaaaacaatccatcaacagcatactctggtgccatgtacccactgcatatgaaaccattacaacaaattagaatat 31746149  T
Q  272 tcacatccatgtaagttaatatacggtattggacatttgttagatactcactaagttccaattattctctctgt 345  Q
    |||||||||||||| |||||||| |||  |||| |||| ||||  ||||||||||| ||||||||||| |||||    
T  31746148 tcacatccatgtaaattaatatatggtgctggaaatttattaggaactcactaagtcccaattattctttctgt 31746075  T

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Target: chr4; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 75 - 341
Target Start/End: Complemental strand, 31741000 - 31740735
Alignment:
Q  75 ccaagtacttacttggccaacaaggttaagagtaccatctgtgtgataatatgctctatttcttttgccacatataatctccaataataaaatgccgaag 174  Q
    |||||||||||||| ||||||||| ||||||||  ||| ||| |||||||||||||||||||||||||||| |||||| || || |||||||| || |||    
T  31741000 ccaagtacttactttgccaacaagattaagagtctcatatgtatgataatatgctctatttcttttgccacgtataatttctaacaataaaattccaaag 31740901  T
Q  175 ctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatccactgcatatgaattcattacagcacattagaatattca 274  Q
    |||||||||||||||||||| ||||||||| ||||||||||||| || ||||||||||||||||||||||||||  |||| || || ||||| |||||||    
T  31740900 ctaaaaacatcagatttcaccgaaaacaattcatcaacagcatactcgggtgccatgtatccactgcatatgaa-gcattgcaacaaattagcatattca 31740802  T
Q  275 catccatgtaagttaatatacggtattggacatttgttagatactcactaagttccaattattctct 341  Q
    |||| | |||| ||||||||   |  ||| || || |||||  |||||||||| |||||||||||||    
T  31740801 catctaagtaaattaatatataatgctgggcagttattagaagctcactaagtcccaattattctct 31740735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 31725223 - 31725123
Alignment:
Q  142 ccacatataatctccaataataaaatgccgaagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatccactgc 241  Q
    |||||||||||||| || |||||||| || ||||| ||||| || |||||||| |||||   |||||||| |||||| |||||||||||||| |||||||    
T  31725223 ccacatataatctctaacaataaaataccaaagctgaaaacgtcggatttcacggaaaattgtccatcaatagcatactctggtgccatgtacccactgc 31725124  T
Q  242 a 242  Q
    |    
T  31725123 a 31725123  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 139 - 242
Target Start/End: Complemental strand, 31718001 - 31717898
Alignment:
Q  139 ttgccacatataatctccaataataaaatgccgaagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatccac 238  Q
    ||||||||||||||||| || | |||||| || ||||| ||||| || |||||||| |||||   |||||||| |||||| |||||||||||||| ||||    
T  31718001 ttgccacatataatctctaacagtaaaataccaaagctgaaaacgtcggatttcacggaaaattgtccatcaatagcatactctggtgccatgtacccac 31717902  T
Q  239 tgca 242  Q
    ||||    
T  31717901 tgca 31717898  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 242
Target Start/End: Complemental strand, 31702682 - 31702568
Alignment:
Q  128 ctctatttcttttgccacatataatctccaataataaaatgccgaagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgc 227  Q
    |||||||| | || |||| ||||||||| || | |||||| || ||||| |||||||| |||||||| |||||   |||||||| |||||| ||||||||    
T  31702682 ctctatttttcttcccacttataatctctaacagtaaaataccaaagctgaaaacatccgatttcacggaaaattgtccatcaatagcatactctggtgc 31702583  T
Q  228 catgtatccactgca 242  Q
    |||||| ||||||||    
T  31702582 catgtacccactgca 31702568  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 31697570 - 31697460
Alignment:
Q  126 tgctctatttcttttgccacatataatctccaataataaaatgccgaagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggt 225  Q
    |||||||||| | || || |||||||||||||||| |||||  || ||||| ||||| || ||||| | ||||||    |||||||||||||| |||||     
T  31697570 tgctctatttttgttcccgcatataatctccaatagtaaaacaccaaagctgaaaacgtctgatttgattgaaaattgcccatcaacagcatactctgga 31697471  T
Q  226 gccatgtatcc 236  Q
    |||||||||||    
T  31697470 gccatgtatcc 31697460  T

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Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 128 - 242
Target Start/End: Original strand, 23560246 - 23560360
Alignment:
Q  128 ctctatttcttttgccacatataatctccaataataaaatgccgaagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgc 227  Q
    ||||| ||||||| ||||||||||||||||  |  ||||| || || || || |||||||||||||| ||||| | ||||||  ||||||||||||||||    
T  23560246 ctctacttctttttccacatataatctccagcatcaaaattccaaaactgaatacatcagatttcacagaaaaaagtccatccgcagcatattctggtgc 23560345  T
Q  228 catgtatccactgca 242  Q
    |||||| ||||||||    
T  23560346 catgtagccactgca 23560360  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 15703515 - 15703579
Alignment:
Q  172 aagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatcc 236  Q
    ||||||||||||||||||||||||||||| |||||| | | |||||||||||| |||||||||||    
T  15703515 aagctaaaaacatcagatttcactgaaaataatccagccatagcatattctggagccatgtatcc 15703579  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 15805179 - 15805247
Alignment:
Q  172 aagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatccactg 240  Q
    |||||||||||||| |||||||||||||| || ||| | | |||||||||||| |||||||||||||||    
T  15805179 aagctaaaaacatcggatttcactgaaaataagccagccatagcatattctggagccatgtatccactg 15805247  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 15697126 - 15697190
Alignment:
Q  172 aagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatcc 236  Q
    ||||| |||||||| |||||||||||||| |||||| | | |||||||||||| |||||||||||    
T  15697126 aagctgaaaacatcggatttcactgaaaataatccagccatagcatattctggagccatgtatcc 15697190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 15711797 - 15711861
Alignment:
Q  172 aagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatcc 236  Q
    |||||||| |||||||| ||||||||||| || ||| | | |||||||||||| |||||||||||    
T  15711797 aagctaaatacatcagacttcactgaaaataacccagccatagcatattctggagccatgtatcc 15711861  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 15722347 - 15722411
Alignment:
Q  172 aagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatcc 236  Q
    |||||| ||||||| ||||| |||||||||| |||| | | |||||||||||| |||||||||||    
T  15722347 aagctataaacatcggatttaactgaaaacactccaaccatagcatattctggagccatgtatcc 15722411  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 15813020 - 15813087
Alignment:
Q  172 aagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatccact 239  Q
    ||||| |||||||| |||||||||||||| || ||| | | ||| |||||||| ||||||||||||||    
T  15813020 aagctgaaaacatcggatttcactgaaaataacccagccatagcgtattctggagccatgtatccact 15813087  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 15764204 - 15764265
Alignment:
Q  178 aaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatccact 239  Q
    |||||||| |||||||| ||||| || ||| | | |||||||||||| ||||||||||||||    
T  15764204 aaaacatcggatttcaccgaaaataacccagccatagcatattctggagccatgtatccact 15764265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 3123078 - 3123009
Alignment:
Q  172 aagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatccactgc 241  Q
    ||||| |||||||| || |||||||||||||| || || | |||||||||||| ||||||||||||||||    
T  3123078 aagctgaaaacatctgacttcactgaaaacaagccttcgatagcatattctggagccatgtatccactgc 3123009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 3103547 - 3103478
Alignment:
Q  172 aagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatccactgc 241  Q
    ||||| |||||||| || || |||||||||||||| || | |||||||||||| ||||| ||||||||||    
T  3103547 aagctgaaaacatctgactttactgaaaacaatccttccatagcatattctggagccatatatccactgc 3103478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 20341908 - 20341975
Alignment:
Q  175 ctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatccactgca 242  Q
    ||||||||||||||||| | ||| ||  ||||||  |||||||||||||| | |||||||||||||||    
T  20341908 ctaaaaacatcagattttattgagaatgatccatgcacagcatattctggaggcatgtatccactgca 20341975  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 5855914 - 5855841
Alignment:
Q  169 ccgaagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatccactgca 242  Q
    ||||||||||||||||||||||| | ||| ||  ||||||  || ||||||||||| | ||| |||||||||||    
T  5855914 ccgaagctaaaaacatcagattttattgagaaagatccatgcactgcatattctggaggcatatatccactgca 5855841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 3080736 - 3080668
Alignment:
Q  172 aagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatccactg 240  Q
    ||||| ||||||||||||||||| ||| | || || || | ||| || |||||||||||||||||||||    
T  3080736 aagctgaaaacatcagatttcacagaatataacccttccatagcgtactctggtgccatgtatccactg 3080668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 3095173 - 3095105
Alignment:
Q  172 aagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatccactg 240  Q
    ||||| ||||||||||||||||| ||| | || || || | ||| || |||||||||||||||||||||    
T  3095173 aagctgaaaacatcagatttcacagaatataacccttccatagcgtactctggtgccatgtatccactg 3095105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 241
Target Start/End: Original strand, 3132770 - 3132841
Alignment:
Q  172 aagctaaaaacatcagatttcactgaaaacaatccatcaacagcatat--tctggtgccatgtatccactgc 241  Q
    ||||| |||||||| || |||||||||||||| || || | |||||||  ||||| ||||||||||||||||    
T  3132770 aagctgaaaacatctgacttcactgaaaacaagccttcgatagcatatattctggagccatgtatccactgc 3132841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 21936713 - 21936639
Alignment:
Q  169 ccgaagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatccactgcat 243  Q
    ||||||||||||||||| || |||||||||||   ||||||||  ||||| ||||| | |||||| |||||||||    
T  21936713 ccgaagctaaaaacatcggacttcactgaaaaatgtccatcaagggcatactctggagacatgtaaccactgcat 21936639  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 2716885 - 2716953
Alignment:
Q  175 ctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatccactgcat 243  Q
    ||||| ||||| |||||| ||||||||||||| || |  |||||||| || | ||||||||||||||||    
T  2716885 ctaaatacatctgatttctctgaaaacaatccttccattgcatattccggagacatgtatccactgcat 2716953  T

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