View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12551_low_2 (Length: 687)
Name: NF12551_low_2
Description: NF12551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12551_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 622; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 1 - 675
Target Start/End: Original strand, 6915848 - 6916518
Alignment:
| Q |
1 |
cagagagtgggcaaacaatcacttctggaatgggagaactacacttagatatttatgttaaatgcattaagatggagtatggggttgatgctacagttgg |
100 |
Q |
| |
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| T |
6915848 |
cagagagtgggcaaacaatcatttctggaatgggagaactacacttagatatttatgttaaacgcattaagatggagtatggggttgatgctacagttgg |
6915947 |
T |
|
| Q |
101 |
aaagccccgggtaaacttcagagaaactgttactcaacgtgctgattttgattatttacataagaagcaatctggaggacaaggacaatatggacgagtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6915948 |
aaagccccgggtaaacttcagagaaactgttactcaacgtgctgattttgattatttacataagaagcaatctggagggcaaggacaatatggacgagtg |
6916047 |
T |
|
| Q |
201 |
attggatatattgaaccacttcctgctgggtcaggaactaagtttgaatttgacaacatgcttgttggtcaagctattccatcgaattttttccctgcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916048 |
attggatatattgaaccacttcctgctgggtcaggaactaagtttgaatttgacaacatgcttgttggtcaagctattccatcgaattttttccctgcaa |
6916147 |
T |
|
| Q |
301 |
ttgagaaaggttttaaagaagctgccaactctggtgccttgattggacatccagttgaaaatctccgagttgtcttgacagatggtgctgctcatgatgt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916148 |
ttgagaaaggttttaaagaagctgccaactctggtgccttgattggacatccagttcaaaatctccgagttgtcttgacagatggtgctgctcatgatgt |
6916247 |
T |
|
| Q |
401 |
tgattccagtgaacttgcctttaagttggcttctatctatgcttttagagagtgttacacagcttccagaccagttatattagaacctgttatgcttgtt |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
6916248 |
tgattccagtgaacttgcctttaagttggcttctatctatgcttttagagagtgttacacagcttccagaccagttatattagaacctgttatgc----t |
6916343 |
T |
|
| Q |
501 |
gaactgaaagtaccaacagaatttcagggagctgttgctggtgacctcaacaagagaaaaggtgtgattgttggcaatgatcaggatgaagatgattctg |
600 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||| |
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| T |
6916344 |
gaactgaaagtaccaacagaatttcagggagctgttgctggtgacctcaacaagagaaaaggtgtgattgttggcaatgttcaggacgaagattattctg |
6916443 |
T |
|
| Q |
601 |
tcataacagctcatgtccctcttaacaatatgtttgggtattctacggctattcgttcgatgacacagggaaagg |
675 |
Q |
| |
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|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916444 |
tcattacagctcatgtgcctcttaacaatatgtttgggtattctacggctattcgttcgatgacacagggaaagg |
6916518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 3e-53; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 83 - 205
Target Start/End: Complemental strand, 15039391 - 15039269
Alignment:
| Q |
83 |
ggttgatgctacagttggaaagccccgggtaaacttcagagaaactgttactcaacgtgctgattttgattatttacataagaagcaatctggaggacaa |
182 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
15039391 |
ggttgatgctacagttggaaagccccgtgtaaacttcagagaaactgttactcaacgtgctgattttgattatttacataagaagcaatccggagggcaa |
15039292 |
T |
|
| Q |
183 |
ggacaatatggacgagtgattgg |
205 |
Q |
| |
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|||||||||||||| |||||||| |
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| T |
15039291 |
ggacaatatggacgggtgattgg |
15039269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 207 - 331
Target Start/End: Complemental strand, 15038438 - 15038314
Alignment:
| Q |
207 |
tatattgaaccacttcctgctgggtcaggaactaagtttgaatttgacaacatgcttgttggtcaagctattccatcgaattttttccctgcaattgaga |
306 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
15038438 |
tatattgaaccactccctgctgggtcagaaactaagtttgaatttgaaaacatgcttgttggtcaagctattccatcaaattttttcgctgcaattgaga |
15038339 |
T |
|
| Q |
307 |
aaggttttaaagaagctgccaactc |
331 |
Q |
| |
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||||||||| ||||||||||||||| |
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| T |
15038338 |
aaggttttatagaagctgccaactc |
15038314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 337 - 449
Target Start/End: Complemental strand, 15038167 - 15038055
Alignment:
| Q |
337 |
ccttgattggacatccagttgaaaatctccgagttgtcttgacagatggtgctgctcatgatgttgattccagtgaacttgcctttaagttggcttctat |
436 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||| |
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| T |
15038167 |
ccttaattggacatcccgttgaaaatctccgagttgtcttgacagatggtgctgctcatgctgttgattccagtgagcttgcctttaagatggcttctat |
15038068 |
T |
|
| Q |
437 |
ctatgcttttaga |
449 |
Q |
| |
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||||||||||||| |
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| T |
15038067 |
ctatgcttttaga |
15038055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 451 - 554
Target Start/End: Complemental strand, 15037928 - 15037825
Alignment:
| Q |
451 |
agtgttacacagcttccagaccagttatattagaacctgttatgcttgttgaactgaaagtaccaacagaatttcagggagctgttgctggtgacctcaa |
550 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||| ||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15037928 |
agtgttacactgcttccagaccaactatattagagcctgttatgcttgttgagctaaaagtaccaaatgaatttcagggagctgttgctggtgacctcaa |
15037829 |
T |
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| Q |
551 |
caag |
554 |
Q |
| |
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|||| |
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|
| T |
15037828 |
caag |
15037825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 615 - 669
Target Start/End: Complemental strand, 15036192 - 15036138
Alignment:
| Q |
615 |
gtccctcttaacaatatgtttgggtattctacggctattcgttcgatgacacagg |
669 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||| |||||||||||||||||| |
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| T |
15036192 |
gtccctcttaacaatatgtttgggtactctacagctcttcgttcgatgacacagg |
15036138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 554 - 616
Target Start/End: Complemental strand, 15037738 - 15037676
Alignment:
| Q |
554 |
gagaaaaggtgtgattgttggcaatgatcaggatgaagatgattctgtcataacagctcatgt |
616 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||| |||||| |||||||| | ||||||||| |
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|
| T |
15037738 |
gagaaagggtatgattgttggcaatgatcaggatggagatgactctgtcattatagctcatgt |
15037676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 15039969 - 15039923
Alignment:
| Q |
23 |
ttctggaatgggagaactacacttagatatttatgttaaatgcatta |
69 |
Q |
| |
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|||||||||||||||||| ||||||||||| |||||| || |||||| |
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| T |
15039969 |
ttctggaatgggagaactgcacttagatatctatgttgaacgcatta |
15039923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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