View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12551_low_23 (Length: 315)
Name: NF12551_low_23
Description: NF12551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12551_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 12 - 303
Target Start/End: Complemental strand, 19615534 - 19615243
Alignment:
| Q |
12 |
cagagaccaaatgctgccaaaatgactatattcaaagaacgaatgatcgattggtttagcttgaccacacccgtaactacacacattttgattcgattgg |
111 |
Q |
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| T |
19615534 |
cagagaccaaatgctgccaaaatgactatattcaaagaacgaatgattgattggtttagcttgaccacacccgtaactacacacattttgattcgattgg |
19615435 |
T |
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| Q |
112 |
atgatcccatgctgcaccatattatctttcattgcaatacgatttcgaaatagaaaccacgcaaaaattgttacttttaaaggtattgttttattccaaa |
211 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19615434 |
atgatcccatgctgcatcatattatctttcattgcaatacgattccgaaatagaaaccacgcaaaaattgttacttttaaaggtattgttttattccaaa |
19615335 |
T |
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| Q |
212 |
ttatattctgatattcatcacgattgggaggttctgctgccgttagtagctggtacactcctcgaacattttaaattgtgtcaaatgatgat |
303 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19615334 |
ttatatcgtgatattcatcacgattgggaggttctgctcccgttagtagctggtacactcctcgaacattttaaattgtgtcaaatgatgat |
19615243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 12 - 286
Target Start/End: Complemental strand, 19621278 - 19621003
Alignment:
| Q |
12 |
cagagaccaaatgctgccaaaatgactatattcaaagaacgaatgatcgattggtttagcttgaccacacccgtaactacacacattttgattcgattgg |
111 |
Q |
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||||| ||||||||||||||||||| || ||||||||||| ||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
19621278 |
cagaggccaaatgctgccaaaatgattacattcaaagaacaaatgatcgattggttcagcttgacaacacctgtaactacacacattttgattcgattgg |
19621179 |
T |
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| Q |
112 |
atgatcccatgctgcaccatattatctttcattgcaatacgatttcgaaatagaaaccacgcaaaaattgttacttttaaaggtattgttttattccaaa |
211 |
Q |
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||| ||||||||||||||| ||| ||||| ||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
19621178 |
atgttcccatgctgcaccaaattgtcttttgttgcaatacgattccgaaatagccaccacacaaaaattgttacttttaaaggtattgttttattccaaa |
19621079 |
T |
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| Q |
212 |
ttatattctgatattcatcacga-ttgggaggttctgctgccgttagtagctggtacactcctcgaacattttaaa |
286 |
Q |
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|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
19621078 |
ttatatgacgatattcatcacgatttgggaggttctgctgccgttagtagctggtacactcctaaaacattataaa |
19621003 |
T |
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