View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12551_low_24 (Length: 311)
Name: NF12551_low_24
Description: NF12551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12551_low_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 474430 - 474137
Alignment:
| Q |
1 |
aaacagaaaagtttctataaagacacttcacaaacttatctatgatttgacacgcggcggcttttagcattttacccgagccattttcaggaacattgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
474430 |
aaacagaaaagtttctataaagacacttcacaaacttatctatgatttgacacgcggcggcttttagcattttacccgagccattttcaggaacattgaa |
474331 |
T |
|
| Q |
101 |
tataactgccaaaacagactgtctagcagcaatctatatcggtcgtcctcttcaattatttatctgtataaccatcaattttctaatttacacgtccttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
474330 |
tataactgccaaaacagactgtctagcagcaatctatatcggtcgtcctcttcaattatttatctgtataaccatcaattttctaatttacacgtccttt |
474231 |
T |
|
| Q |
201 |
tcattccgacctgctagctcatttgttctccaattaaatccaaacctacaaggaggaacgacacaccttggaataataagtagtagaaatgcat |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
474230 |
tcattccgacctgctagctcatttgttctccaattaaatccaaacctacaaggaggaacgacacaccttggaataataagtagtagaaatgcat |
474137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University