View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12551_low_32 (Length: 255)
Name: NF12551_low_32
Description: NF12551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12551_low_32 |
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| [»] scaffold0202 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 31045386 - 31045606
Alignment:
| Q |
1 |
ccgcacacttctacaacttcatttgttctctccacactctaaaatatatggattggaacacacttctacagtttattaggattactgcaaaagatatgaa |
100 |
Q |
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| T |
31045386 |
ccgcacacttctacaacttcatttgttctctccacactataaaatttatggattggaacacgcttctacagtttatcaggattactgcaaaagatatgaa |
31045485 |
T |
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| Q |
101 |
ttgctaccagcaaaggaatacaacagaggaccgaggtacaaacttaaatttttaaaataatgatggaaacttgaatgaatcatcttactagagagatcat |
200 |
Q |
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| T |
31045486 |
ttgctaccagcaaaggaatacaacagaggaccgaggtacaaacttaaatttttaaaataatgatggaaacttgaatgaatcatcttactagagagatcat |
31045585 |
T |
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| Q |
201 |
gtgcgaaacctatccctatat |
221 |
Q |
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|||||| |||||||||||||| |
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| T |
31045586 |
gtgcgacacctatccctatat |
31045606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 94 - 197
Target Start/End: Original strand, 31035277 - 31035380
Alignment:
| Q |
94 |
atatgaattgctaccagcaaaggaatacaacagaggaccgaggtacaaacttaaatttttaaaataatgatggaaacttgaatgaatcatcttactagag |
193 |
Q |
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||||||||| ||||||||||| | ||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31035277 |
atatgaatttctaccagcaaatgcctacaatagaggaccgaggtacacacttaaatttttaaaataatgatgtaaacttgaatgaatcatcttactagag |
31035376 |
T |
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| Q |
194 |
agat |
197 |
Q |
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|||| |
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| T |
31035377 |
agat |
31035380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 31056596 - 31056657
Alignment:
| Q |
142 |
acttaaatttttaaaataatgatggaaacttgaatgaatcatcttactagagagatcatgtg |
203 |
Q |
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| T |
31056596 |
acttaaatttttaaaataatgatggaaacttaaatgaataatcttatcagagagaacatgtg |
31056657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 31096551 - 31096490
Alignment:
| Q |
142 |
acttaaatttttaaaataatgatggaaacttgaatgaatcatcttactagagagatcatgtg |
203 |
Q |
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| T |
31096551 |
acttatatttttaaaataatgatggaatcttgaatgaatcatctttgtagagagaacatgtg |
31096490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 5261 - 5209
Alignment:
| Q |
144 |
ttaaatttttaaaataatgatggaaacttgaatgaatcatcttactagagaga |
196 |
Q |
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| T |
5261 |
ttaaatttttaaaataatgatggaaacttgaatgaatcatctttgtagagaga |
5209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 154
Target Start/End: Complemental strand, 171984 - 171919
Alignment:
| Q |
87 |
gcaaaagatatgaattgctaccagcaaaggaatacaacagaggaccgaggtacaaacttaaattttta |
154 |
Q |
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| T |
171984 |
gcaaaagatatgagtttctaccgacaaaggcctacaacagaggaccgag--acacacttaaattttta |
171919 |
T |
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