View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12551_low_38 (Length: 225)

Name: NF12551_low_38
Description: NF12551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12551_low_38
NF12551_low_38
[»] chr1 (3 HSPs)
chr1 (110-215)||(35583263-35583368)
chr1 (149-197)||(1815306-1815354)
chr1 (149-196)||(43492457-43492504)
[»] chr6 (1 HSPs)
chr6 (149-196)||(16766757-16766804)
[»] chr5 (1 HSPs)
chr5 (149-196)||(7677765-7677812)
[»] chr3 (1 HSPs)
chr3 (149-196)||(40993298-40993345)
[»] chr2 (1 HSPs)
chr2 (149-196)||(2438682-2438729)
[»] chr7 (2 HSPs)
chr7 (149-182)||(7197274-7197307)
chr7 (152-196)||(8234198-8234242)
[»] scaffold0053 (1 HSPs)
scaffold0053 (149-197)||(8847-8895)
[»] chr4 (1 HSPs)
chr4 (149-197)||(34306766-34306814)


Alignment Details
Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 110 - 215
Target Start/End: Complemental strand, 35583368 - 35583263
Alignment:
Q  110 caccacttaattaagtctaatcatacttgtcagtgttgttgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatctatagaatgtctc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||     
T  35583368 caccacttaattaagtctaatcatacttgtcagtgttgttgtcggtgtctgacacaacacatgcccgacactgtgtcacgcctaatctatagaatgtctg 35583269  T
Q  210 tgcttc 215  Q
    ||||||    
T  35583268 tgcttc 35583263  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 1815306 - 1815354
Alignment:
Q  149 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatct 197  Q
    |||||||||| ||||| ||||||||||||||||| | ||||||||||||    
T  1815306 tgtcggtgtccgacacgacacatgtccgacaccgggacacgcctaatct 1815354  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 43492504 - 43492457
Alignment:
Q  149 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 196  Q
    |||||||||| |||||||||||||||||||||||   |||||||||||    
T  43492504 tgtcggtgtcagacacaacacatgtccgacaccggcacacgcctaatc 43492457  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 16766757 - 16766804
Alignment:
Q  149 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 196  Q
    |||||||||| |||||||||| |||||||||||| | |||||||||||    
T  16766757 tgtcggtgtcggacacaacacgtgtccgacaccgggacacgcctaatc 16766804  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 7677765 - 7677812
Alignment:
Q  149 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 196  Q
    ||||||||||||||||  |||||||||||||||| | |||||||||||    
T  7677765 tgtcggtgtctgacacgtcacatgtccgacaccgggacacgcctaatc 7677812  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 40993345 - 40993298
Alignment:
Q  149 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 196  Q
    |||||||||| ||||| ||||||||||||||||| | |||||||||||    
T  40993345 tgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatc 40993298  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 2438729 - 2438682
Alignment:
Q  149 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 196  Q
    |||||||||| ||||| ||||||||||||||||| | |||||||||||    
T  2438729 tgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatc 2438682  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 182
Target Start/End: Complemental strand, 7197307 - 7197274
Alignment:
Q  149 tgtcggtgtctgacacaacacatgtccgacaccg 182  Q
    |||||||||| |||||||||||||||||||||||    
T  7197307 tgtcggtgtcggacacaacacatgtccgacaccg 7197274  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 8234198 - 8234242
Alignment:
Q  152 cggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 196  Q
    ||||||| ||||| ||||||||||||||||| | |||||||||||    
T  8234198 cggtgtcggacacgacacatgtccgacaccgagacacgcctaatc 8234242  T

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Target: scaffold0053 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 8847 - 8895
Alignment:
Q  149 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatct 197  Q
    |||||||||| ||||| |||| |||||||||||| | ||||||||||||    
T  8847 tgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatct 8895  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 34306814 - 34306766
Alignment:
Q  149 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatct 197  Q
    |||||||||| ||||| |||| |||||||||||| | ||||||||||||    
T  34306814 tgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatct 34306766  T

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