View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12551_low_41 (Length: 210)
Name: NF12551_low_41
Description: NF12551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12551_low_41 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 121; Significance: 3e-62; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 43384 - 43565
Alignment:
| Q |
13 |
gcataggttgaatagtaaaatgtaacatcttatgaattgagatataaagaagtgatggtgaaatatttatgtgaataatgttaatacatattgtagatta |
112 |
Q |
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| T |
43384 |
gcataggttgaatagtaaaatgttacatcttatgaattgagatataaagaagtgatggtgaaatatttatgtgaataatgttaatacatattgtagatta |
43483 |
T |
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| Q |
113 |
annnnnnnctacaattttacctcatatattnnnnnnnnctacgagaatagccaagttgacgaaggatgacacttgatatatat |
195 |
Q |
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| T |
43484 |
a-ttttttctacaattttacctcatatattaaaaaaaacaacgagaatagccaggttgacgaaggatgacacttgatatatat |
43565 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 20345245 - 20345341
Alignment:
| Q |
16 |
taggttgaatagtaaaatgtaacatcttatgaattgagatataaagaagtgatggtgaaatatttatgtgaataatgttaatacatattgtagattaa |
113 |
Q |
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| T |
20345245 |
taggatgaatagtaaaatgatacatcttataaattgatatataaagaagtaatggtgaaa-atttttatgaatattattaatacatataggagattaa |
20345341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 20386424 - 20386501
Alignment:
| Q |
14 |
cataggttgaatagtaaaatgtaacatcttatgaattgagatataaagaagtgatggtgaaatatttatgtgaataat |
91 |
Q |
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| T |
20386424 |
catagattgaatagtagaacataacatcttatgagttgagatataaagacgtgatggtgaaagattaatgtggataat |
20386501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 20366187 - 20366248
Alignment:
| Q |
14 |
cataggttgaatagtaaaatgtaacatcttatgaattgagatataaagaagtgatggtgaaa |
75 |
Q |
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| T |
20366187 |
cataggttgaatagtagaacataacaacttgtgagttgagatataaagacgtgatggtgaaa |
20366248 |
T |
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