View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12551_low_42 (Length: 204)

Name: NF12551_low_42
Description: NF12551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12551_low_42
NF12551_low_42
[»] scaffold0985 (1 HSPs)
scaffold0985 (13-187)||(1018-1192)
[»] chr3 (4 HSPs)
chr3 (13-194)||(34931529-34931710)
chr3 (13-194)||(2435977-2436158)
chr3 (55-194)||(15786404-15786543)
chr3 (52-194)||(14509791-14509933)
[»] chr8 (1 HSPs)
chr8 (13-194)||(25753430-25753611)
[»] scaffold0114 (1 HSPs)
scaffold0114 (13-194)||(27293-27473)
[»] chr6 (3 HSPs)
chr6 (13-196)||(10512182-10512365)
chr6 (61-182)||(19496776-19496897)
chr6 (13-193)||(21695190-21695370)
[»] chr7 (1 HSPs)
chr7 (46-194)||(5616290-5616438)
[»] chr5 (3 HSPs)
chr5 (55-194)||(8721071-8721210)
chr5 (46-194)||(20584064-20584212)
chr5 (61-194)||(42761653-42761786)
[»] chr4 (2 HSPs)
chr4 (49-194)||(17454356-17454501)
chr4 (13-137)||(15095126-15095250)
[»] chr1 (1 HSPs)
chr1 (46-194)||(25598371-25598519)
[»] scaffold0007 (1 HSPs)
scaffold0007 (46-194)||(238260-238408)
[»] chr2 (1 HSPs)
chr2 (61-194)||(27068735-27068868)


Alignment Details
Target: scaffold0985 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: scaffold0985
Description:

Target: scaffold0985; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 1018 - 1192
Alignment:
Q  13 acatcaataagaccaacagcttgaacagtttctcgaaatcccctaattagccaattaggtctagtggtcctcccctttttctcatctgcatgaagaatgt 112  Q
    ||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||| |    
T  1018 acatcaataagaccagcagcttgaatagcttctcgaaatcccctaattagccaattaggtctagtggccctcccttttttctcatatgcatgaagaatat 1117  T
Q  113 cattaaaatcacccatcagacaccaaggtaaatttatctgtctagcaacaccacgaataaaattccaagaatctc 187  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1118 cattaaaatcccccatcagacaccaaggtaaatttatctgtctagcaagaccacgaataaaattccaagaatctc 1192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 34931710 - 34931529
Alignment:
Q  13 acatcaataagaccaacagcttgaacagtttctcgaaatcccctaattagccaattaggtctagtggtcctcccctttttctcatctgcatgaagaatgt 112  Q
    ||||||||||||||||||||||||  || |||||||||||||||||| ||||||||||||||||||| |||||| |||||||| |  ||||| |||||||    
T  34931710 acatcaataagaccaacagcttgagtagcttctcgaaatcccctaataagccaattaggtctagtggccctcccttttttctcgtacgcatggagaatgt 34931611  T
Q  113 cattaaaatcacccatcagacaccaaggtaaatttatctgtctagcaacaccacgaataaaattccaagaatctctgcttct 194  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  34931610 cattaaaatcccccatcaggcaccaaggtaaatttatctgtctagcaagaccacgaataaaattccaagaatctcttcttct 34931529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 2436158 - 2435977
Alignment:
Q  13 acatcaataagaccaacagcttgaacagtttctcgaaatcccctaattagccaattaggtctagtggtcctcccctttttctcatctgcatgaagaatgt 112  Q
    ||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||| || || ||||    
T  2436158 acatcaataagaccaacagcttgaatagcttctcgaaatcccctaatgagccaattaggtctagtggccctcccttttttctcatctgcgtggagtatgt 2436059  T
Q  113 cattaaaatcacccatcagacaccaaggtaaatttatctgtctagcaacaccacgaataaaattccaagaatctctgcttct 194  Q
    |||||||||| |||||||| ||||||||||| |||||| |||| |||| ||||||||||||||||||||||||||| |||||    
T  2436058 cattaaaatcccccatcaggcaccaaggtaagtttatcggtctggcaagaccacgaataaaattccaagaatctcttcttct 2435977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 55 - 194
Target Start/End: Complemental strand, 15786543 - 15786404
Alignment:
Q  55 ctaattagccaattaggtctagtggtcctcccctttttctcatctgcatgaagaatgtcattaaaatcacccatcagacaccaaggtaaatttatctgtc 154  Q
    ||||| |||||||||||||||||||  || |||||||| || || ||||||||||||||||||||||| ||||| |||||||| |||||||| || |  |    
T  15786543 ctaatgagccaattaggtctagtggctcttccctttttttcgtcagcatgaagaatgtcattaaaatcccccattagacaccagggtaaattaatattgc 15786444  T
Q  155 tagcaacaccacgaataaaattccaagaatctctgcttct 194  Q
    | |||| || ||||| |||||||||||| ||||| |||||    
T  15786443 ttgcaagacgacgaagaaaattccaagagtctcttcttct 15786404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 52 - 194
Target Start/End: Original strand, 14509791 - 14509933
Alignment:
Q  52 cccctaattagccaattaggtctagtggtcctcccctttttctcatctgcatgaagaatgtcattaaaatcacccatcagacaccaaggtaaatttatct 151  Q
    ||||| || |||||||| ||||||||||  || || || |||||||| | |||||| || ||||||||||| |||||  |||||||||||||||| || |    
T  14509791 cccctgataagccaatttggtctagtggctctacctttcttctcatcggaatgaaggatatcattaaaatctcccatttgacaccaaggtaaattaattt 14509890  T
Q  152 gtctagcaacaccacgaataaaattccaagaatctctgcttct 194  Q
    ||||||||| ||| ||||||||||||||||| ||||| |||||    
T  14509891 gtctagcaagaccccgaataaaattccaagagtctcttcttct 14509933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 25753430 - 25753611
Alignment:
Q  13 acatcaataagaccaacagcttgaacagtttctcgaaatcccctaattagccaattaggtctagtggtcctcccctttttctcatctgcatgaagaatgt 112  Q
    ||||||||||||||| || |||||  || |||||||||||||||||| ||||||||||||||||||| |||||| |||||||| |||||||| |||||||    
T  25753430 acatcaataagaccagcaacttgagtagcttctcgaaatcccctaatgagccaattaggtctagtggccctcccttttttctcgtctgcatggagaatgt 25753529  T
Q  113 cattaaaatcacccatcagacaccaaggtaaatttatctgtctagcaacaccacgaataaaattccaagaatctctgcttct 194  Q
    |||||||||| |||||||| ||||||||||||||||||| |||||||| |||||| |||||||||||||||||||| |||||    
T  25753530 cattaaaatcccccatcaggcaccaaggtaaatttatctttctagcaagaccacggataaaattccaagaatctcttcttct 25753611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 27293 - 27473
Alignment:
Q  13 acatcaataagaccaacagcttgaacagtttctcgaaatcccctaattagccaattaggtctagtggtcctcccctttttctcatctgcatgaagaatgt 112  Q
    |||||||||||||||  |||||||  || || ||||||||||||||| ||||||||||||||||||| |||||| |||||||| |||||||| |||||||    
T  27293 acatcaataagaccagtagcttgagtagcttttcgaaatcccctaatgagccaattaggtctagtggccctcccttttttctcgtctgcatggagaatgt 27392  T
Q  113 cattaaaatcacccatcagacaccaaggtaaatttatctgtctagcaacaccacgaataaaattccaagaatctctgcttct 194  Q
    |||||||||| ||||| || ||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||| |||||    
T  27393 cattaaaatcccccattaggcaccaaggtaaatttttctgtctagcaagaccacgaat-aaattccaagaatctcttcttct 27473  T

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Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 10512365 - 10512182
Alignment:
Q  13 acatcaataagaccaacagcttgaacagtttctcgaaatcccctaattagccaattaggtctagtggtcctcccctttttctcatctgcatgaagaatgt 112  Q
    ||||||||||||||| || ||||||||| || || ||||||||| || |||||||| ||||| |||| |||||| ||||||| ||| ||||||||||| |    
T  10512365 acatcaataagaccagcatcttgaacagcttgtcaaaatcccctgataagccaattgggtctggtggccctcccttttttctgatcagcatgaagaatat 10512266  T
Q  113 cattaaaatcacccatcagacaccaaggtaaatttatctgtctagcaacaccacgaataaaattccaagaatctctgcttctcc 196  Q
    | |||||||| |||||||||||||||||| |||| ||||||||||||| |||| | || |||||||| |||||||| |||||||    
T  10512265 cgttaaaatcccccatcagacaccaaggtgaattaatctgtctagcaagaccatggatgaaattccacgaatctcttcttctcc 10512182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 182
Target Start/End: Complemental strand, 19496897 - 19496776
Alignment:
Q  61 agccaattaggtctagtggtcctcccctttttctcatctgcatgaagaatgtcattaaaatcacccatcagacaccaaggtaaatttat-ctgtctagca 159  Q
    ||||||||||||||||||   || ||||||||||| || ||||||||||| ||||||||||| || || || || || |||||||| || ||| ||||||    
T  19496897 agccaattaggtctagtgactcttccctttttctcgtcggcatgaagaatatcattaaaatccccaattaggcaacacggtaaattaatactg-ctagca 19496799  T
Q  160 acaccacgaataaaattccaaga 182  Q
    | || ||||| ||||||||||||    
T  19496798 agacgacgaagaaaattccaaga 19496776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 21695370 - 21695190
Alignment:
Q  13 acatcaataagaccaacagcttgaacagtttctcgaaatcccctaattagccaattaggtctagtggtcctcccctttttctcatctgcatgaagaatgt 112  Q
    ||||||| ||| |||||| |||||||   ||  ||||||||||| || |||||||| ||||| || | ||| || || || ||||  ||||| ||||| |    
T  21695370 acatcaacaagtccaacatcttgaaccacttgacgaaatccccttatgagccaattgggtctggtagcccttcctttcttttcattagcatggagaatat 21695271  T
Q  113 cattaaaatcacccatcagacaccaaggtaaatttatctgtctagcaacaccacgaataaaattccaagaatctctgcttc 193  Q
    |||||||||| ||||| | |||||| |||| ||| || || | |||||  ||||||||||| ||||| || ||||| ||||    
T  21695270 cattaaaatctcccattaaacaccatggtagattaatttgcccagcaaggccacgaataaagttccacgagtctcttcttc 21695190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 46 - 194
Target Start/End: Original strand, 5616290 - 5616438
Alignment:
Q  46 cgaaatcccctaattagccaattaggtctagtggtcctcccctttttctcatctgcatgaagaatgtcattaaaatcacccatcagacaccaaggtaaat 145  Q
    ||||||||||| || |||||||| |||||||||| ||| || ||||||||||| |||||||| || ||||||||||| ||||| || |||||||||||||    
T  5616290 cgaaatcccctgataagccaatttggtctagtggcccttccttttttctcatcggcatgaaggatatcattaaaatctcccattaggcaccaaggtaaat 5616389  T
Q  146 ttatctgtctagcaacaccacgaataaaattccaagaatctctgcttct 194  Q
    |||| |||||||||| ||| ||||||||||||||||| ||||| |||||    
T  5616390 ttatttgtctagcaagaccccgaataaaattccaagagtctcttcttct 5616438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 3e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 55 - 194
Target Start/End: Complemental strand, 8721210 - 8721071
Alignment:
Q  55 ctaattagccaattaggtctagtggtcctcccctttttctcatctgcatgaagaatgtcattaaaatcacccatcagacaccaaggtaaatttatctgtc 154  Q
    ||||| |||||||||||||||||||  || |||||||| || || ||||||||||||||||||||||| ||||| ||||||||||||||||| || |  |    
T  8721210 ctaatgagccaattaggtctagtggctcttccctttttttcgtcggcatgaagaatgtcattaaaatcccccattagacaccaaggtaaattaatattgc 8721111  T
Q  155 tagcaacaccacgaataaaattccaagaatctctgcttct 194  Q
    | |||| || ||||| |||||||||||| ||||| |||||    
T  8721110 ttgcaagacgacgaagaaaattccaagagtctcttcttct 8721071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 194
Target Start/End: Complemental strand, 20584212 - 20584064
Alignment:
Q  46 cgaaatcccctaattagccaattaggtctagtggtcctcccctttttctcatctgcatgaagaatgtcattaaaatcacccatcagacaccaaggtaaat 145  Q
    |||||||| ||||| |||||||| ||||| || | ||| || || |||||||| ||||| || || ||||||||||| ||||| | |||||| |||| ||    
T  20584212 cgaaatcctctaatgagccaattgggtctggtagcccttcctttcttctcatcagcatggaggatatcattaaaatcccccattaaacaccatggtagat 20584113  T
Q  146 ttatctgtctagcaacaccacgaataaaattccaagaatctctgcttct 194  Q
    | || |||| ||||| || |||||| |||||||| || ||||| |||||    
T  20584112 tgatttgtccagcaagactacgaatgaaattccatgagtctcttcttct 20584064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 194
Target Start/End: Complemental strand, 42761786 - 42761653
Alignment:
Q  61 agccaattaggtctagtggtcctcccctttttctcatctgcatgaagaatgtcattaaaatcacccatcagacaccaaggtaaatttatctgtctagcaa 160  Q
    ||||| || ||||||||||  || || ||||| |||||||  ||||| || || |||||||| ||||| | ||||||||||| | | |||||  ||||||    
T  42761786 agccagtttggtctagtggctcttccttttttttcatctgagtgaaggatatcgttaaaatctcccatgatacaccaaggtagactaatctggttagcaa 42761687  T
Q  161 caccacgaataaaattccaagaatctctgcttct 194  Q
     ||  ||||||||||||||||| ||||| |||||    
T  42761686 gactccgaataaaattccaagagtctcttcttct 42761653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 194
Target Start/End: Complemental strand, 17454501 - 17454356
Alignment:
Q  49 aatcccctaattagccaattaggtctagtggtcctcccctttttctcatctgcatgaagaatgtcattaaaatcacccatcagacaccaaggtaaattta 148  Q
    |||||||| || |||||||| ||||||||||  || || || |||||||| |  ||||| || ||||||||||| ||||| ||||||||||||| ||| |    
T  17454501 aatcccctgataagccaatttggtctagtggctcttcctttcttctcatcggagtgaaggatatcattaaaatctcccattagacaccaaggtagattaa 17454402  T
Q  149 tctgtctagcaacaccacgaataaaattccaagaatctctgcttct 194  Q
    | |   |||||| ||  ||||||||||||||||| ||||| |||||    
T  17454401 tttaattagcaatactccgaataaaattccaagagtctcttcttct 17454356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 15095126 - 15095250
Alignment:
Q  13 acatcaataagaccaacagcttgaacagtttctcgaaatcccctaattagccaattaggtctagtggtcctcccctttttctcatctgcatgaagaatgt 112  Q
    ||||||||||||||| |  |||| | || ||  ||||||||||| || |||||||| |||||| | | ||| || ||||||| ||| | |||||||||||    
T  15095126 acatcaataagaccagcgtcttgtatagcttgacgaaatcccctgataagccaatttggtctaatagccctaccttttttctgatcggaatgaagaatgt 15095225  T
Q  113 cattaaaatcacccatcagacacca 137  Q
    ||||||| || ||||| ||||||||    
T  15095226 cattaaagtctcccattagacacca 15095250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 194
Target Start/End: Original strand, 25598371 - 25598519
Alignment:
Q  46 cgaaatcccctaattagccaattaggtctagtggtcctcccctttttctcatctgcatgaagaatgtcattaaaatcacccatcagacaccaaggtaaat 145  Q
    ||||| ||||| || |||||||| ||||| |||| ||| || |||||||| || |  ||||| ||||||||||| |||||||| |||||||| ||||||     
T  25598371 cgaaagcccctgataagccaatttggtctggtggccctaccttttttctcctcggagtgaagtatgtcattaaagtcacccataagacaccacggtaaag 25598470  T
Q  146 ttatctgtctagcaacaccacgaataaaattccaagaatctctgcttct 194  Q
    | || || ||||||| ||  | ||| ||||||||||| ||||| |||||    
T  25598471 tgatttgcctagcaagactcctaatgaaattccaagattctctccttct 25598519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 194
Target Start/End: Original strand, 238260 - 238408
Alignment:
Q  46 cgaaatcccctaattagccaattaggtctagtggtcctcccctttttctcatctgcatgaagaatgtcattaaaatcacccatcagacaccaaggtaaat 145  Q
    ||||| ||||| || |||||||| ||||| |||| ||| || |||||||| || | ||| |||||||||||||| || ||||| |||||||| ||||||     
T  238260 cgaaagcccctgataagccaatttggtctggtggccctaccttttttctcctcggaatgtagaatgtcattaaagtctcccattagacaccacggtaaag 238359  T
Q  146 ttatctgtctagcaacaccacgaataaaattccaagaatctctgcttct 194  Q
    | || || |||||||  |   |||| ||||||||||| ||||| |||||    
T  238360 tgatttgcctagcaaggctctgaatgaaattccaagagtctctccttct 238408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 194
Target Start/End: Complemental strand, 27068868 - 27068735
Alignment:
Q  61 agccaattaggtctagtggtcctcccctttttctcatctgcatgaagaatgtcattaaaatcacccatcagacaccaaggtaaatttatctgtctagcaa 160  Q
    ||||| || ||||||||||  || || ||||| |||||||  ||||| || || |||||||| ||||| | ||||||||||| | | |||||  ||||||    
T  27068868 agccagtttggtctagtggctcttccttttttttcatctgagtgaaggatatcgttaaaatctcccatgatacaccaaggtagactaatctggttagcaa 27068769  T
Q  161 caccacgaataaaattccaagaatctctgcttct 194  Q
     ||  ||||||||||||||||| ||||| |||||    
T  27068768 gactccgaataaaattccaagagtctcttcttct 27068735  T

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