View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12551_low_6 (Length: 454)
Name: NF12551_low_6
Description: NF12551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12551_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 12 - 440
Target Start/End: Complemental strand, 41141878 - 41141444
Alignment:
| Q |
12 |
gaagcagagaaggagaacccaaattggaccaaatttggggtagaaaatcttccaaccaaggcttctgattcatcaccgtcatcaaaggtgatttttcata |
111 |
Q |
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| T |
41141878 |
gaagcagagaaggagaacccaaattggaccaaatttggggtagaaaatcttccaaccaaggcttctgattcatcaccgtcatcaaaggtgatttttcata |
41141779 |
T |
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| Q |
112 |
atttagagcaagaagttccgatttattctagtttgcgtttatgnnnnnnnnnn-ctttctgattcattatgcagatgttgtgacttactatttgcttttt |
210 |
Q |
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| T |
41141778 |
atttagagcaagaagttccgatttattctagtttgcgtttatgtttttttttttctttctgattcattatgcagatgttgtgacttactatttgcttttt |
41141679 |
T |
|
| Q |
211 |
catgtttagtacattaattttctgtgtatagataaaattcttctgttgttt-----ccaactcatatggtgtaaaatgaaactatatttgcaggttacta |
305 |
Q |
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| T |
41141678 |
catgtttagtgtattaattttctgtgtatagataaaattcttctgttgtttggtttccaactcatatggtgtaaaatgaaactatatttgcaggttacta |
41141579 |
T |
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| Q |
306 |
ctgcagatccaattgtgaacaaatatatagccatgggactcagccgagacgtagttcctattgctgttaagaattatggtgataatcctaccaaagtatg |
405 |
Q |
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| T |
41141578 |
ctgcagatccaattgtgaacaaatatatagccatgggactcagccgagacgtagttcctattgctgttaagaattatggtgataatcctaccaaagtatg |
41141479 |
T |
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| Q |
406 |
ttctctgttccggtaacttataatgaacatgatgt |
440 |
Q |
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| T |
41141478 |
ttctctgttccggtaacttataatgaacatgatgt |
41141444 |
T |
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