View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12551_low_9 (Length: 410)
Name: NF12551_low_9
Description: NF12551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12551_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 15 - 388
Target Start/End: Original strand, 36373210 - 36373583
Alignment:
| Q |
15 |
ttcactgccacaatcaagactactttacgggaagtttttgtctgatctttcctggtttgttaccgcgtcatcgttaaataaggtttcatatgtcataaga |
114 |
Q |
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| T |
36373210 |
ttcattgccacaatcaagactacttttcgggaagtttttgtctgatctttcccggtttgttaccgcgtcatcgttaaagaaggtttcatatgtcataaga |
36373309 |
T |
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| Q |
115 |
tcggttcaaaacaagattgtgtatgaagttatgggcaatgatcctaatattagtggtcctatgaatgttttgaacttcaaatcctgtgatgatggtaaga |
214 |
Q |
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| T |
36373310 |
tcggttcaaaacaagattgtgtatgaagttatgggcaatgatcctaatattagtggtccaatgaatgttttgaacttcaaatcctgtgatgatggtaaga |
36373409 |
T |
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| Q |
215 |
gtggtccaaaggttaataaggaaaatcagttgactgatgctaaaggaaagaacgctgttgatgtgttaaatcatgagccatacaatgagtctccattatc |
314 |
Q |
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| T |
36373410 |
gtggtccaaaggttaataaggaaaatcagttgactgatgctaaaggaaagaacgctgttgatgtgttaaatcatgagccatacaatgagtctccattatc |
36373509 |
T |
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| Q |
315 |
atgtgatgaagaaggtggttataatgtttcttcgggacatgttaataatttctgcacaaagaagcttaagagaa |
388 |
Q |
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| T |
36373510 |
atgtgatgaagaaggtggttataatgtttcttcgggacatgttaataatttctgcacaaagaagtttaagagaa |
36373583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 32252580 - 32252523
Alignment:
| Q |
109 |
ataagatcggttcaaaacaagattgtgtatgaagttatgggcaatgatcctaatatta |
166 |
Q |
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| T |
32252580 |
ataagatctgtgcaaaacaagattgtgtatcaagttatgggaaatgatactgatatta |
32252523 |
T |
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