View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12552_high_1 (Length: 635)

Name: NF12552_high_1
Description: NF12552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12552_high_1
NF12552_high_1
[»] chr4 (7 HSPs)
chr4 (1-508)||(24391494-24391997)
chr4 (338-603)||(48779718-48779984)
chr4 (344-606)||(20251408-20251671)
chr4 (344-543)||(47077960-47078154)
chr4 (337-414)||(24129391-24129468)
chr4 (338-452)||(27538101-27538217)
chr4 (492-588)||(24129202-24129298)
[»] chr3 (6 HSPs)
chr3 (338-620)||(52653766-52654052)
chr3 (338-571)||(33709822-33710057)
chr3 (338-606)||(40574172-40574438)
chr3 (332-416)||(16729765-16729849)
chr3 (534-571)||(23686176-23686213)
chr3 (534-571)||(24058413-24058450)
[»] chr8 (5 HSPs)
chr8 (338-622)||(12729383-12729662)
chr8 (353-619)||(44729086-44729359)
chr8 (489-606)||(28695974-28696091)
chr8 (337-445)||(14546294-14546403)
chr8 (353-434)||(28696113-28696195)
[»] chr1 (8 HSPs)
chr1 (337-606)||(49061365-49061635)
chr1 (337-606)||(49053785-49054055)
chr1 (338-434)||(52282039-52282138)
chr1 (337-426)||(50059485-50059575)
chr1 (338-488)||(42263402-42263554)
chr1 (344-430)||(17458409-17458496)
chr1 (337-416)||(12634476-12634555)
chr1 (515-577)||(31286103-31286164)
[»] chr5 (8 HSPs)
chr5 (337-622)||(9851281-9851568)
chr5 (336-606)||(29006475-29006746)
chr5 (495-606)||(36203207-36203318)
chr5 (493-588)||(15205481-15205576)
chr5 (359-606)||(9080508-9080755)
chr5 (338-467)||(36203084-36203214)
chr5 (338-415)||(15205357-15205434)
chr5 (560-622)||(2022656-2022721)
[»] chr7 (8 HSPs)
chr7 (354-622)||(12239459-12239731)
chr7 (356-622)||(1840661-1840926)
chr7 (337-575)||(24870409-24870647)
chr7 (526-620)||(37469058-37469155)
chr7 (419-603)||(23757029-23757212)
chr7 (338-572)||(34091362-34091596)
chr7 (338-577)||(20463987-20464227)
chr7 (468-623)||(1820951-1821105)
[»] chr6 (2 HSPs)
chr6 (344-579)||(11931953-11932188)
chr6 (338-622)||(28611985-28612270)
[»] chr2 (3 HSPs)
chr2 (336-606)||(14218742-14219012)
chr2 (354-445)||(34681118-34681211)
chr2 (377-456)||(38327394-38327475)
[»] scaffold0007 (1 HSPs)
scaffold0007 (354-606)||(217757-217999)


Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Original strand, 24391494 - 24391997
Alignment:
Q  1 ttcatgaaacaacgtggtcctatgttgggattgaaacgaaaaggttcattaaaccatggcaatgtttggtctttagattgaacgnnnnnnnncctactat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||    
T  24391494 ttcatgaaacaacgtggtcctatgttgggattgaaacgaaaaggttcattaaaccatggcaatgtttggtctttagattgaacgttttttt-cctactat 24391592  T
Q  101 tacaatagtagcatgtatcataaatatcaaatgcatgttttagtgtgatattattgtttgtgcggaagttactaaatttaagagtgatgatcttatatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24391593 tacaatagtagcatgtatcataaatatcaaatgcatgttttagtgtgatattattgtttgtgcggaagttactaaatttaagagtgatgatcttatatta 24391692  T
Q  201 tagtatatgtatggtaacatgaaaagtaactattaattttttgtttatcttgatattacaactatcatggatacgttttggattattgtaagttggcaaa 300  Q
    ||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |    
T  24391693 ta---tatgtatggtaacatgaaaagtaactattaattttttgtttatcttgatattacaactaacatggatacattttggattattgtaagttggcata 24391789  T
Q  301 tgtccatgaaaagagatagaacatcacattcttgttaaaaattatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttatt 400  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24391790 tgtccatgaaaagagatagaacatcacattcttgttaaacattatactaaatcattctttcttttctctagtgcatgagagaaattgacataactttatt 24391889  T
Q  401 ctgtaaactatcattgtcgatacgtttggtgtgatgtgcaagtcacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcat 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24391890 ctgtaaactatcattgtcgatacgtttggtgtgatgtgcaagtcacaccaaggattccattgtatcttgaaggggattcgccggtataacccttttgcat 24391989  T
Q  501 ccgattgg 508  Q
    ||| ||||    
T  24391990 ccggttgg 24391997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 338 - 603
Target Start/End: Complemental strand, 48779984 - 48779718
Alignment:
Q  338 aaaattatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtga-t 435  Q
    ||||| ||| |||| ||||| || |||||||||||| | || | ||| ||||||||||||||||| ||||||||||||| | |||| | ||||||||| |    
T  48779984 aaaataatattaaatcattcattattttctctagtgcacgacataaactgacataactttattctctaaactatcattgattgatatgcttggtgtgaat 48779885  T
Q  436 gtgcaagtcacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacct 535  Q
    |||||||||||  ||| |||| ||| |||||||||||||||||| ||| |||| ||||||||||||| |||||| |||||||  |||| ||||||||| |    
T  48779884 gtgcaagtcacgtcaatgatttcatagtatcctgaaggggattcaccgatata-cccttttgcatccaattggcataactggcagaggcgaatcgaacat 48779786  T
Q  536 aaaggttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcatgatcattttcatcat 603  Q
    ||||||||| || |||||||||||||||| ||||||| |||||  ||| ||||| |||| || |||||    
T  48779785 aaaggttagtgtatcccacacacgctttgaaatttatatgcacacttcatcatgttcatctttatcat 48779718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 344 - 606
Target Start/End: Original strand, 20251408 - 20251671
Alignment:
Q  344 atactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtg-atgtgcaa 441  Q
    |||||||| |||| |||||||||| ||||| | |||||||||||||| ||||||||| ||||||||||||||| |||||||  ||| |||| |||| |||    
T  20251408 atactaaatcattatttcttttctgtagtgcacgagagaaattgacagaactttattatgtaaactatcattgatcgatacacttgatgtgaatgtacaa 20251507  T
Q  442 gtcacaccaaggattccattgtatcctgaa-ggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaagg 540  Q
    | |||| ||| ||||| ||  ||||||||| |||||||| || |||| |||| |||||||||| ||| | | ||| || | ||  ||| ||| |||||      
T  20251508 ggcacatcaatgattcaatcatatcctgaagggggattcaccagtat-acccctttgcatccggttgacattactagtaggggcaaatggaatctaaata 20251606  T
Q  541 ttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcatgatcattttcatcatctt 606  Q
    |||| |||| | |||||||||||| |||||||||| ||| ||| ||||| |||| |||||||||||    
T  20251607 ttagtgtgt-ctacacacgctttgaaatttatgtgtactcttcatcatgttcatcttcatcatctt 20251671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 344 - 543
Target Start/End: Complemental strand, 47078154 - 47077960
Alignment:
Q  344 atactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtga-tgtgcaag 442  Q
    |||||||| ||||||||||||| | ||||||| |||||||||||||| ||||||||||||||||||| |||||   || |||||||||| | |||| |||    
T  47078154 atactaaatcattctttcttttttgtagtgtacgagagaaattgacagaactttattctgtaaactaacattg---at-cgtttggtgtaaatgtgtaag 47078059  T
Q  443 tcacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggtt 542  Q
    ||||  |||||||||||| ||||||| ||||||||| | |   |  ||||||||||||||||||| | ||| |||||| |  |||| ||| |||||||||    
T  47078058 tcacgtcaaggattccatggtatcctaaaggggatttgtc--aaatacccttttgcatccgattgacataattggtggggaagaatagaatctaaaggtt 47077961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 337 - 414
Target Start/End: Complemental strand, 24129468 - 24129391
Alignment:
Q  337 aaaaattatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcat 414  Q
    |||||| |||||||| | ||||||||||||||||||| | |  ||||||||||||||||||||| |||||||||||||    
T  24129468 aaaaataatactaaatctttctttcttttctctagtgcacggaagaaattgacataactttattatgtaaactatcat 24129391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 338 - 452
Target Start/End: Complemental strand, 27538217 - 27538101
Alignment:
Q  338 aaaattatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgt-gat 435  Q
    ||||| |||||||| ||||||||  |||||||| || || ||||||||||||||||||| |||||||||||  |||||| |||||| |||| || |  ||    
T  27538217 aaaataatactaaatcattctttaatttctctaatgcataagagaaattgacataacttaattctgtaaacggtcattgatcgatatgtttagtataaat 27538118  T
Q  436 gtgcaagtcacaccaag 452  Q
    |||||||||||| ||||    
T  27538117 gtgcaagtcacatcaag 27538101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 492 - 588
Target Start/End: Complemental strand, 24129298 - 24129202
Alignment:
Q  492 cttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcat 588  Q
    ||||| |||| | ||||| |||||||||| || ||||| ||  ||||| |||  ||||||| |||| ||||||||||||||||||||||||| ||||    
T  24129298 cttttacatctggttggcataactggtgggggagaatcaaagttaaagattaatgtgtcccgcacatgctttggaatttatgtgcacttttcatcat 24129202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 165; Significance: 6e-88; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 338 - 620
Target Start/End: Original strand, 52653766 - 52654052
Alignment:
Q  338 aaaattatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtga-tg 436  Q
    |||||||||||||| ||||||| ||||||||||||| | |||  ||||||||| ||||||||||||||||||| ||||||||||||  ||| ||||| ||    
T  52653766 aaaattatactaaatcattcttacttttctctagtgcacgaggaaaattgacagaactttattctgtaaactaccattgtcgatacacttgatgtgaatg 52653865  T
Q  437 tgcaagtcacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaaccta 536  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||  || |||| |||||||    
T  52653866 tgcaagtcacgtcaaggattccattgtatcctgaaggggattcgccggtataaccattttgcatccggttggcataactggtgagggcgaattgaaccta 52653965  T
Q  537 aaggttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcatgatcattttcatca---tcttgatcaagttattgc 620  Q
    |||||||| |||||||||||||||||||||||||||||||||  ||| ||||| ||||||||||||   ||||||||||||||||||    
T  52653966 aaggttagtgtgtcccacacacgctttggaatttatgtgcacacttcatcatgttcattttcatcatcttcttgatcaagttattgc 52654052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 338 - 571
Target Start/End: Original strand, 33709822 - 33710057
Alignment:
Q  338 aaaattatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtg-atg 436  Q
    |||||||||||||| ||||||||||||||||||||| |  |||||| |||||| ||||||||||||||||||| ||||||||||||| |||||||| |||    
T  33709822 aaaattatactaaatcattctttcttttctctagtgcaccagagaatttgacagaactttattctgtaaactaccattgtcgatacgcttggtgtgaatg 33709921  T
Q  437 tgcaagtcacaccaaggattccattgtatcctgaaggggattcgccggtata-acccttttgcatccgattggcgtaactggtggaggtgaatcgaacct 535  Q
    ||||||||||  ||||||||| || ||||||| ||||||||| ||||||||| ||||||||||||||| ||| | ||||||||||||||||||||| |||    
T  33709922 tgcaagtcacgtcaaggattctatcgtatcctaaaggggattagccggtatatacccttttgcatccggttgacataactggtggaggtgaatcgatcct 33710021  T
Q  536 aaaggttagcgtgtcccacacacgctttggaattta 571  Q
    ||||||||| ||||||||||||||||||||||||||    
T  33710022 aaaggttagtgtgtcccacacacgctttggaattta 33710057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 338 - 606
Target Start/End: Complemental strand, 40574438 - 40574172
Alignment:
Q  338 aaaattatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtg-at 435  Q
    ||||| ||| |||| ||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||| | |||||| || ||||| ||    
T  40574438 aaaataatattaaatcattctttcttttctctagtgcacgagagaaattgacagaactttattctgtaaactatcattgattgatacgcttcgtgtgaat 40574339  T
Q  436 gtgcaagtcacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacct 535  Q
    |||||||||||  ||| |||||||| ||||||||||||  |||||| | |||  || |||||||||| |||  | | |||||||| |||||||| | | |    
T  40574338 gtgcaagtcacgtcaaagattccatagtatcctgaaggtaattcgctgatat-gccattttgcatccaattaacattactggtgggggtgaatcaagctt 40574240  T
Q  536 aaaggttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcatgatcattttcatcatctt 606  Q
    ||||||||| |||||||||| || |||  ||||||||||||||   |||||||| ||||||||||||||||    
T  40574239 aaaggttagtgtgtcccacatacacttcagaatttatgtgcac---tcttcatgttcattttcatcatctt 40574172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 332 - 416
Target Start/End: Original strand, 16729765 - 16729849
Alignment:
Q  332 ttgttaaaaattatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg 416  Q
    ||||||||||| ||| |||| ||||||||||||| | ||||| | ||   ||||||||||||||||||| |||||||||||||||    
T  16729765 ttgttaaaaataatattaaatcattctttcttttatttagtgcacgaagaaaattgacataactttattttgtaaactatcattg 16729849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 571
Target Start/End: Original strand, 23686176 - 23686213
Alignment:
Q  534 ctaaaggttagcgtgtcccacacacgctttggaattta 571  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  23686176 ctaaaggttagcgtgtcccacacacggtttcgaattta 23686213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 571
Target Start/End: Original strand, 24058413 - 24058450
Alignment:
Q  534 ctaaaggttagcgtgtcccacacacgctttggaattta 571  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  24058413 ctaaaggttagcgtgtcccacacacggtttcgaattta 24058450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 147; Significance: 3e-77; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 338 - 622
Target Start/End: Original strand, 12729383 - 12729662
Alignment:
Q  338 aaaattatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtga-tg 436  Q
    ||||||||||||||  |||||||||||||||||||| | |||||||||||||| |||||||||| ||||||||  |||||||||| | ||||||||| ||    
T  12729383 aaaattatactaaataattctttcttttctctagtgcacgagagaaattgacagaactttattcagtaaactacaattgtcgatatgcttggtgtgaatg 12729482  T
Q  437 tgcaagtcacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaaccta 536  Q
    |||||||||   |||||||| ||| ||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||| |||||| |||||    
T  12729483 tgcaagtcatgtcaaggatttcatcgtatcctgaaggggaatcgccggtataacccttttgcatccggttggcataactggtggaggcgaatcgtaccta 12729582  T
Q  537 aaggttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcatgatcattttcatcatcttgatcaagttattgcag 622  Q
    |||||||| ||||||||||||| |||||||||| ||||| |||||||      ||||| |||||| ||||||||||| ||||||||    
T  12729583 aaggttagtgtgtcccacacactctttggaattcatgtgtacttttc------atcatgttcatcttcttgatcaaggtattgcag 12729662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 353 - 619
Target Start/End: Original strand, 44729086 - 44729359
Alignment:
Q  353 cattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtga-tgtgcaagtcacacca 450  Q
    ||||||||| |||| |||||| | |||||| |||||||  |||  ||||||||||||||||||| |||||||| ||||| ||| ||||||||||||  ||    
T  44729086 cattctttcatttccctagtgcacgagagagattgaca--actacattctgtaaactatcattgatcgatacgcttggtatgaatgtgcaagtcacgtca 44729183  T
Q  451 aggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagcgtgtc 550  Q
    ||||||||| |||||||| |||||||||||||||||| ||||| ||||||||| ||||| ||||| |  | ||||||| |||| |||||||||| || ||    
T  44729184 aggattccaatgtatcctaaaggggattcgccggtattaccctcttgcatccggttggcataactcgcaggggtgaattgaacataaaggttagtgtatc 44729283  T
Q  551 ccacacacgctttggaatttatgtgcacttttc----ttcatgatcattttc---atcatcttgatcaagttattg 619  Q
    ||||||||||||||||||||||||||||| |||    |||||| ||||||||   ||| |||||||||||||||||    
T  44729284 ccacacacgctttggaatttatgtgcactcttcatcattcatgttcattttcattatcttcttgatcaagttattg 44729359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 489 - 606
Target Start/End: Complemental strand, 28696091 - 28695974
Alignment:
Q  489 acccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcat 588  Q
    ||||||||||||| | ||| | |||||||||  || ||||| |||||||| ||||| |||||||||||||||||||||||||||| ||| | ||| ||||    
T  28696091 acccttttgcatctggttgacataactggtgagggcgaatcaaacctaaaagttagtgtgtcccacacacgctttggaatttatgcgcattcttcatcat 28695992  T
Q  589 gatcattttcatcatctt 606  Q
    | |||| |||||||||||    
T  28695991 gttcatattcatcatctt 28695974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 337 - 445
Target Start/End: Complemental strand, 14546403 - 14546294
Alignment:
Q  337 aaaaattatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtg-a 434  Q
    |||||| |||||||| |||||||||||||||||| || || ||||||||||||||||||||| | |||||| || ||||| |||||| |||||||||| |    
T  14546403 aaaaataatactaaatcattctttcttttctctaatgaatcagagaaattgacataactttagtatgtaaagtaccattgatcgata-gtttggtgtgaa 14546305  T
Q  435 tgtgcaagtca 445  Q
    |||||||||||    
T  14546304 tgtgcaagtca 14546294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 353 - 434
Target Start/End: Complemental strand, 28696195 - 28696113
Alignment:
Q  353 cattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtga 434  Q
    |||||||||||||||| || | | |||  ||||||||| ||||||||||| |||| |||||||| || ||||| |||||||||    
T  28696195 cattctttcttttctccagggcacgaggaaaattgacagaactttattctataaattatcattgatcaatacgcttggtgtga 28696113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 147; Significance: 3e-77; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 337 - 606
Target Start/End: Original strand, 49061365 - 49061635
Alignment:
Q  337 aaaaattatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtga-t 435  Q
    ||||||||||||||| ||||||||||||||||||||| | ||| |||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| |    
T  49061365 aaaaattatactaaatcattctttcttttctctagtgcacgagggaaattgacaaaactttattctgtaaactaccattgtcgatatgtttggtgtgaat 49061464  T
Q  436 gtgcaagtcacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacct 535  Q
    |||||| ||||  ||||||||||||||||| |||||||||||||| ||||||||||||||||||||   ||||| |||||||||| || |||||||||||    
T  49061465 gtgcaaatcacgtcaaggattccattgtattctgaaggggattcgtcggtataacccttttgcatctagttggcataactggtgggggcgaatcgaacct 49061564  T
Q  536 aaaggttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcatgatcattttcatcatctt 606  Q
    ||||  ||| || ||||||||||||||| ||||||||||||||  ||| ||||| |||| ||| |||||||    
T  49061565 aaagactagtgtttcccacacacgctttagaatttatgtgcacacttcatcatgttcatcttcttcatctt 49061635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 337 - 606
Target Start/End: Original strand, 49053785 - 49054055
Alignment:
Q  337 aaaaattatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtga-t 435  Q
    ||||||||||||||| |||||||||| |||||||||| | ||| ||||||| || ||||||||| ||||||||| ||||||||||| | ||||||||| |    
T  49053785 aaaaattatactaaatcattctttctcttctctagtgcacgagggaaattggcagaactttattttgtaaactaccattgtcgatatgcttggtgtgaat 49053884  T
Q  436 gtgcaagtcacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacct 535  Q
    |||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||  |||||||||| || |||||||||||    
T  49053885 gtgcaagtcacgtcaaggatttcattgtatcctgaaggggattcgccggtataacccttttgcatccagttggtataactggtgggggcgaatcgaacct 49053984  T
Q  536 aaaggttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcatgatcattttcatcatctt 606  Q
    ||||||||| || |||||||||||| |||||||||||||| ||  ||| ||||| |||| ||| |||||||    
T  49053985 aaaggttagtgtttcccacacacgcattggaatttatgtgtacacttcatcatgttcatcttcttcatctt 49054055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 338 - 434
Target Start/End: Complemental strand, 52282138 - 52282039
Alignment:
Q  338 aaaattatactaaaccattctttcttttctctagtgtatgagaga--aattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtga 434  Q
    ||||| ||| |||| ||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||| ||||| ||||| || |||||||||    
T  52282138 aaaataatattaaatcattctttcttttctctagtgcatgagagagaaattgacataactttattctgtaaactaccattgatcgatgcgcttggtgtga 52282039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 337 - 426
Target Start/End: Original strand, 50059485 - 50059575
Alignment:
Q  337 aaaaattatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtt 426  Q
    |||||| ||||| || |||||||| |||||||||||| | |||||||||| ||| ||||||||||| ||||||||||||| ||||||||||    
T  50059485 aaaaataatactgaatcattctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatcgatacgtt 50059575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 338 - 488
Target Start/End: Complemental strand, 42263554 - 42263402
Alignment:
Q  338 aaaattatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtg-at 435  Q
    ||||| |||||| | ||||||||||||||||||||| | ||||||||| |||| |||||| || |||||| || ||||| |||||||| || || || ||    
T  42263554 aaaataatactatatcattctttcttttctctagtgcacgagagaaatcgacaaaactttgttttgtaaattaacattgttcgatacgcttagtatgaat 42263455  T
Q  436 gtgcaagtcacaccaaggattccattgtatcctgaaggggattcgccggtata 488  Q
    ||||||||||   ||| ||||  |  |||||||||||||||||| ||| ||||    
T  42263454 gtgcaagtcatgtcaaagattttaaagtatcctgaaggggattcaccgttata 42263402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 430
Target Start/End: Original strand, 17458409 - 17458496
Alignment:
Q  344 atactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggt 430  Q
    |||||||| ||||||||| ||||||||||| | ||||  ||| || ||||||||||| ||||||||||||||| |||||||| |||||    
T  17458409 atactaaatcattctttcatttctctagtgcacgagatgaatagagataactttattttgtaaactatcattgatcgatacgcttggt 17458496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 337 - 416
Target Start/End: Original strand, 12634476 - 12634555
Alignment:
Q  337 aaaaattatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg 416  Q
    |||||| ||||||||   || |||||||||| ||||| || ||||||||||||| |||||||||||||||| || |||||    
T  12634476 aaaaataatactaaatgcttttttcttttctttagtgcattagagaaattgacagaactttattctgtaaattaccattg 12634555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 515 - 577
Target Start/End: Original strand, 31286103 - 31286164
Alignment:
Q  515 tggtggaggtgaatcgaacctaaaggttagcgtgtcccacacacgctttggaatttatgtgca 577  Q
    ||||||||||||||| ||||||||  |||||||||   |||||||||||| ||||||||||||    
T  31286103 tggtggaggtgaatcaaacctaaaatttagcgtgt-ttacacacgctttgaaatttatgtgca 31286164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 124; Significance: 2e-63; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 337 - 622
Target Start/End: Complemental strand, 9851568 - 9851281
Alignment:
Q  337 aaaaattatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtga-t 435  Q
    |||||| |||||||| || |||||||||||||||||| |  ||||||  ||||| ||||||||||||||||  | ||||||||||||| ||||||||| |    
T  9851568 aaaaataatactaaatcagtctttcttttctctagtgcacaagagaatgtgacaaaactttattctgtaaaacaccattgtcgatacgcttggtgtgaat 9851469  T
Q  436 gtgcaagtcacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacct 535  Q
    |||||| |||||  ||| ||||||| ||||| ||||||||||||||||||||| ||||||||||| || ||||| |||||||| | || |||| ||||||    
T  9851468 gtgcaaatcacattaagtattccatcgtatcttgaaggggattcgccggtata-cccttttgcattcggttggcttaactggtag-ggagaattgaacct 9851371  T
Q  536 aaaggttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcatgatcattttcatcatc---ttgatcaagttattgcag 622  Q
    ||| ||||| |||||||||||||||||||||||||||||||||  ||| ||||| |||| |||||||||   ||||||||||||||||||    
T  9851370 aaatgttagtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcag 9851281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 336 - 606
Target Start/End: Original strand, 29006475 - 29006746
Alignment:
Q  336 taaaaattatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgt-aaactatcattgtcgatacgtttggtgtg- 433  Q
    |||||||||||||||| ||||| ||||||| ||||||| | |||| || |||||| ||||||||||||| |||||| ||||| ||||||| ||||||||     
T  29006475 taaaaattatactaaatcattcattcttttttctagtgcacgagataagttgacagaactttattctgtaaaactaacattgacgatacgcttggtgtga 29006574  T
Q  434 atgtgcaagtcacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaac 533  Q
    ||||| | ||||   ||||||||||||||||| |||||| |||||||||  ||||||||||||||||| | |||    |||| |||| || |||||||||    
T  29006575 atgtgtatgtcatgtcaaggattccattgtattctgaagaggattcgccaatataacccttttgcatctggttgataaaactagtgg-ggcgaatcgaac 29006673  T
Q  534 ctaaaggttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcatgatcattttcatcatctt 606  Q
    ||||| ||||| ||||| ||||||||||||| |||||||||||||| ||| ||||  |||| || ||||||||    
T  29006674 ctaaaagttagtgtgtctcacacacgctttgaaatttatgtgcactcttcatcatattcatcttgatcatctt 29006746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 495 - 606
Target Start/End: Original strand, 36203207 - 36203318
Alignment:
Q  495 ttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcatgatcat 594  Q
    ||||||||| ||||| |||||||||| |  ||||||||| |||||||||| ||| |||||||||||  || |||||||||||||  ||| | ||| ||||    
T  36203207 ttgcatccggttggcataactggtggggacgaatcgaacttaaaggttagtgtggcccacacacgccatgaaatttatgtgcacaattcattatgttcat 36203306  T
Q  595 tttcatcatctt 606  Q
     |||||||||||    
T  36203307 cttcatcatctt 36203318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 493 - 588
Target Start/End: Original strand, 15205481 - 15205576
Alignment:
Q  493 ttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcat 588  Q
    ||||||||||  | ||| |||||||||| |  ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||| ||| ||||    
T  15205481 ttttgcatccagtcggcataactggtggggacgaatcgaacctcaaagttagtgtgtcccacacacgctttgaaatttatgggcactcttcatcat 15205576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 606
Target Start/End: Complemental strand, 9080755 - 9080508
Alignment:
Q  359 ttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtg-atgtgcaagtcacaccaaggatt 456  Q
    ||||||||||||||  | ||||| |||||| | ||||||||| ||||||||| ||||| || ||||||||  |||| |||||||||| ||  |||| |||    
T  9080755 ttcttttctctagtacacgagagcaattgagagaactttattttgtaaactaccattgatctatacgtttaatgtgaatgtgcaagttacgtcaagaatt 9080656  T
Q  457 ccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggc-gtaactggtggaggtgaatcgaacctaaaggttagcgtgtcccaca 555  Q
    |||  ||||| |||||||| |||| |||||| || | ||||||||   ||| |   || |||||| || ||||||||| ||||| |||| ||||  ||||    
T  9080655 ccaaagtatcatgaagggg-ttcgtcggtat-actcatttgcatctacttgacaaaaattggtgggggcgaatcgaacttaaagcttagtgtgt-tcaca 9080559  T
Q  556 cacgctttggaatttatgtgcacttttcttcatgatcattttcatcatctt 606  Q
    ||| ||||  ||||||||||| |||||  ||||| ||||||||||| ||||    
T  9080558 cactctttaaaatttatgtgccctttttatcatgttcattttcatcttctt 9080508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 467
Target Start/End: Original strand, 36203084 - 36203214
Alignment:
Q  338 aaaattatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtg-atg 436  Q
    ||||||||||||||  |||| |||| |||| ||||||| ||||||| ||| || ||||||||| ||||| ||| |||||  |||||  ||| |||| | |    
T  36203084 aaaattatactaaattattcgttctcttctttagtgtacgagagaatttgtcagaactttattttgtaagctaccattgcagatacacttgatgtgaacg 36203183  T
Q  437 tgcaagtcacaccaaggattccattgtatcc 467  Q
    ||||||||||  ||||||||| |||| ||||    
T  36203184 tgcaagtcacgtcaaggattctattgcatcc 36203214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 338 - 415
Target Start/End: Original strand, 15205357 - 15205434
Alignment:
Q  338 aaaattatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcatt 415  Q
    ||||| |||||||| |||| | |||||||| ||||| |  ||||||||| |||| |||||||||| ||||||||||||    
T  15205357 aaaataatactaaatcattgtatcttttctttagtgaacaagagaaattaacatgactttattctctaaactatcatt 15205434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 560 - 622
Target Start/End: Complemental strand, 2022721 - 2022656
Alignment:
Q  560 ctttggaatttatgtgcacttttcttcatgatcattttcatca---tcttgatcaagttattgcag 622  Q
    ||||| ||||||||||||| |||| ||||| |||| |||||||   ||||||||||||||||||||    
T  2022721 ctttgaaatttatgtgcacatttcatcatgttcatcttcatcatcttcttgatcaagttattgcag 2022656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 3e-56; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 354 - 622
Target Start/End: Complemental strand, 12239731 - 12239459
Alignment:
Q  354 attctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtga-tgtgcaagtcacaccaag 452  Q
    |||||||||| |||||||| ||  ||| ||||||||| |||||||||||| |||||| ||||||||||||| ||||||||| ||||||||||||  ||||    
T  12239731 attctttcttatctctagtatactagataaattgacaaaactttattctggaaactaccattgtcgatacgcttggtgtgaatgtgcaagtcacgtcaag 12239632  T
Q  453 gattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattgg-cgtaactggtggaggtgaatcgaacctaaaggttagcgtgtcc 551  Q
    |||| ||| ||||||||||||||||||||||  ||| |||||||||||||| || | | |||||||||| || |||||||||||||||||||  ||||||    
T  12239631 gatttcatcgtatcctgaaggggattcgccgacata-cccttttgcatccggtttgacataactggtgggggcgaatcgaacctaaaggttaatgtgtcc 12239533  T
Q  552 cacacacgctttggaatttatgtgcacttttcttca---tgatcattttcatcatcttgatcaagttattgcag 622  Q
    ||||||||||||| |||||||||||||  ||| |||   | |||||  ||||| |||| |||||||||||||||    
T  12239532 cacacacgctttgaaatttatgtgcacacttcatcatattcatcatcatcatcttcttaatcaagttattgcag 12239459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 356 - 622
Target Start/End: Original strand, 1840661 - 1840926
Alignment:
Q  356 tctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtgatg-tgcaagtcacaccaagg 453  Q
    ||||||||||||| | || |||||||||||||||| | ||||||| ||||||||||||||| ||||||  ||||||||||   |||||   ||  |||||    
T  1840661 tctttcttttctcaaatgcatgagagaaattgacagatctttattatgtaaactatcattgatcgatatatttggtgtgaacatgcaaa--acgtcaagg 1840758  T
Q  454 attccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagcgtgtccca 553  Q
    ||||||   |||  |||||| |||| || |||||  || ||||||||||| ||||| | |||| |||||| ||||| ||  |||||||||| || | |||    
T  1840759 attccaaaatattttgaaggagatttgctggtatt-cctttttgcatccggttggcatcactgatggaggcgaatcaaatgtaaaggttagtgtattcca 1840857  T
Q  554 cacacgctttggaatttatgtgcacttttcttcatgatcattttcatcatcttgatcaagttattgcag 622  Q
    ||||| |||| || ||||||| |||||||| ||||| ||||  |||||  |||||||||||||||||||    
T  1840858 cacacactttagattttatgtccacttttcatcatgttcatcatcatctacttgatcaagttattgcag 1840926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 337 - 575
Target Start/End: Original strand, 24870409 - 24870647
Alignment:
Q  337 aaaaattatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtga- 434  Q
    |||||| ||||||||  | |||||||||||||||||| | |||| ||||||| | ||||||||| ||||||||||||||| || ||||| ||||||| |     
T  24870409 aaaaataatactaaataagtctttcttttctctagtgcacgagaaaaattgatagaactttattatgtaaactatcattgatcaatacgcttggtgtaaa 24870508  T
Q  435 tgtgcaagtcacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacc 534  Q
    | || |||| ||  |||  ||  ||| ||||||| | | ||||| |||   ||| |||||||||||||| ||||| |||||||| | || |||||||||     
T  24870509 tatgaaagtaacgtcaataatatcatagtatcctaatgtggatttgccac-ata-cccttttgcatccggttggcataactggtaggggcgaatcgaact 24870606  T
Q  535 taaaggttagcgtgtcccacacacgctttggaatttatgtg 575  Q
    ||||||||||| ||||||| ||| | | |||||||||||||    
T  24870607 taaaggttagcatgtcccatacaagatgtggaatttatgtg 24870647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 526 - 620
Target Start/End: Original strand, 37469058 - 37469155
Alignment:
Q  526 aatcgaacctaaaggttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcatgatcattttcatca---tcttgatcaagttattgc 620  Q
    |||| |||||||||||||| ||||||||||||| ||||| ||||||||||||| |||  ||||| |||| |||||||   ||||||||||||||||||    
T  37469058 aatcaaacctaaaggttagtgtgtcccacacacactttgaaatttatgtgcacatttaatcatgttcatcttcatcatcttcttgatcaagttattgc 37469155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 419 - 603
Target Start/End: Complemental strand, 23757212 - 23757029
Alignment:
Q  419 gatacgtttggtgtga-tgtgcaagtcacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactgg 517  Q
    |||||||||||||||| |||| | |||||  ||||| | ||||  |||| ||||||||||||||| ||||| |||||||||||| | || || ||| |||    
T  23757212 gatacgtttggtgtgaatgtgaatgtcacgtcaagggtcccatattatcttgaaggggattcgccagtata-cccttttgcatctggttagcttaattgg 23757114  T
Q  518 tggaggtgaatcgaacctaaaggttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcatgatcattttcatcat 603  Q
    | | ||||||||||||||||| |||||  |||| |||| |  ||| ||||||||||| |||| ||| ||||| |||| ||||||||    
T  23757113 tag-ggtgaatcgaacctaaaagttagtatgtcacacataaacttcggaatttatgttcactcttcatcatgttcatcttcatcat 23757029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 338 - 572
Target Start/End: Complemental strand, 34091596 - 34091362
Alignment:
Q  338 aaaattatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcatt-gtcgatacgtttggtgtg-at 435  Q
    ||||| ||| |||| ||||| |||||||||||| || |||||||||||||| | ||||||| | ||||||||| ||||  |  ||||| |||||||| ||    
T  34091596 aaaataatattaaatcattcattcttttctctaatgcatgagagaaattgagagaactttactttgtaaactaccattaattcatacgattggtgtgaat 34091497  T
Q  436 gtgcaagtcacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacct 535  Q
    |||||||||||  ||||||||| ||  ||| || || || ||| ||| | || ||  ||||||| ||||||| | ||||||||||||||||||| ||| |    
T  34091496 gtgcaagtcacgtcaaggattctataatattctaaaaggaattggccag-at-acttttttgcaaccgattgacataactggtggaggtgaatcaaacat 34091399  T
Q  536 aaaggttagcgtgtcccacacacgctttggaatttat 572  Q
    ||| ||||| ||||  |||| | |||||||| |||||    
T  34091398 aaaagttagtgtgttacacataggctttggagtttat 34091362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 338 - 577
Target Start/End: Original strand, 20463987 - 20464227
Alignment:
Q  338 aaaattatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtg-at 435  Q
    ||||| |||||||| |||| |||  || ||||| |||| |||||||||||||| || |||||| |  |||| ||||||| |||||| | |||||||| ||    
T  20463987 aaaataatactaaatcattatttacttactctaatgtacgagagaaattgacagaaatttattttacaaacaatcattgatcgatatgcttggtgtgaat 20464086  T
Q  436 gtgcaagtcacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacct 535  Q
    ||||||||| |   |||||||  |   |||  |||| | |||| |||||||| ||| |||| |||||||||| | ||||| |||| |  |||||||||||    
T  20464087 gtgcaagtctcgttaaggattttaaaatattttgaaagagatttgccggtat-accatttttcatccgattgacataactagtggggacgaatcgaacct 20464185  T
Q  536 aaaggttagcgtgtcccacacacgctttggaatttatgtgca 577  Q
    |||  ||||  | ||| |||| ||||||||||||||| ||||    
T  20464186 aaaaattagtatatcctacacgcgctttggaatttatatgca 20464227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 623
Target Start/End: Original strand, 1820951 - 1821105
Alignment:
Q  468 tgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagcgtgtcccacacacgctttggaa 567  Q
    |||||| |||| | ||||||| || |||||||| |||||||| | |||  | |||  ||||| ||| |||| ||||| |||| ||||||||| |||  ||    
T  1820951 tgaaggagatttggcggtata-cctttttgcattcgattggcatgacttattgagacgaatcaaacgtaaaagttagtgtgttccacacacgatttaaaa 1821049  T
Q  568 tttatgtgcacttttcttcatgatcattttcatcatcttgatcaagttattgcagt 623  Q
    ||||||| ||| |||| ||||  ||||  |||||||| | ||||||||||||||||    
T  1821050 tttatgtacacgtttcatcatattcatcatcatcatcataatcaagttattgcagt 1821105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 4e-52; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 344 - 579
Target Start/End: Original strand, 11931953 - 11932188
Alignment:
Q  344 atactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtga-tgtgcaag 442  Q
    |||||| | ||||||||||||| ||||||| | ||||||| |||||| || |||||||| ||||||| |||||||||||   ||||||||| |  |||||    
T  11931953 atactatatcattctttcttttatctagtgcacgagagaatttgacagaattttattctataaactaccattgtcgataaacttggtgtgaataagcaag 11932052  T
Q  443 tcacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggtt 542  Q
    ||||| |||||||| ||| |||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||| |||| || ||||| ||||||||||||    
T  11932053 tcacatcaaggatttcatcgtatcctgaagggg-ttcgctggtataacccttttgcatccggttggcataactagtgggggcgaatcaaacctaaaggtt 11932151  T
Q  543 agcgtgtcccacacacgctttggaatttatgtgcact 579  Q
    || |||||| ||||| |||||| ||||||||||||||    
T  11932152 agtgtgtccaacacatgctttgaaatttatgtgcact 11932188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 338 - 622
Target Start/End: Complemental strand, 28612270 - 28611985
Alignment:
Q  338 aaaattatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgt-cgatacgtttggtgtga-t 435  Q
    |||||||||||||| ||||||||||| ||||||||| | ||| | |||||||| ||| || || |||| |||| |||||  ||||| | ||||||||| |    
T  28612270 aaaattatactaaatcattctttcttatctctagtgcacgaggggaattgacagaacattgttttgtatactaccattgaacgatatgcttggtgtgaat 28612171  T
Q  436 gtgcaagtcacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacct 535  Q
    || ||||||||  ||||||||||||||||| ||||||||||||||||| ||| ||| |||| ||| |  ||| | |||||||||| |   ||||||||||    
T  28612170 gtacaagtcacgtcaaggattccattgtattctgaaggggattcgccgatat-accattttacatactgttgacataactggtggggaaaaatcgaacct 28612072  T
Q  536 aaaggttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcatgatcattttcatca---tcttgatcaagttattgcag 622  Q
    ||||||||  |||| |||||||  ||||  |||||||||||||  ||| ||||| |||| |||||||   ||||||||||||||||||||    
T  28612071 aaaggtta-tgtgttccacaca--ctttaaaatttatgtgcacacttcatcatgttcatattcatcatcttcttgatcaagttattgcag 28611985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 7e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 336 - 606
Target Start/End: Complemental strand, 14219012 - 14218742
Alignment:
Q  336 taaaaattatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtg- 433  Q
    ||||||| |||||||| ||||||||||||||||||||| | |||  ||||||| | ||||||||| ||||||||||||||| | |||||||||||||||     
T  14219012 taaaaataatactaaatcattctttcttttctctagtgcacgaggaaaattgaaagaactttattttgtaaactatcattgatggatacgtttggtgtga 14218913  T
Q  434 atgtgcaagtcacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaac 533  Q
    |||| || ||||   ||  ||||| || ||||| |||||| |||||   | ||| || |||||||||||  ||| | |||||||||| |  |||||||||    
T  14218912 atgtacatgtcaagtcagtgattctatagtatcttgaaggagattcattgatat-actcttttgcatccagttgacataactggtgg-gacgaatcgaac 14218815  T
Q  534 ctaaaggttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcatgatcattttcatcatctt 606  Q
    ||||| |||||  ||||  |||||| ||||  ||||||||||||||| || ||||| |||  |||||||||||    
T  14218814 ctaaaagttagtttgtctaacacacacttttaaatttatgtgcacttgtcatcatgttcaccttcatcatctt 14218742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 354 - 445
Target Start/End: Complemental strand, 34681211 - 34681118
Alignment:
Q  354 attctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtg-atgtgcaagtca 445  Q
    |||||||||||||||| ||| | |||||||||||||| |||||||||  |||||||||||||| |||||||| ||| |||| ||||||||||||    
T  34681211 attctttcttttctctggtgaacgagagaaattgacaaaactttattacgtaaactatcattgatcgatacgcttgatgtgaatgtgcaagtca 34681118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 456
Target Start/End: Complemental strand, 38327475 - 38327394
Alignment:
Q  377 gagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtg-atgtgcaagtcacaccaaggatt 456  Q
    ||||||||||| || ||||||||| |||||| || ||||| ||||| ||||||||||| ||||| |||||||  ||||||||    
T  38327475 gagagaaattgccaaaactttattatgtaaattaccattgatcgatgcgtttggtgtgaatgtgtaagtcacgtcaaggatt 38327394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 354 - 606
Target Start/End: Original strand, 217757 - 217999
Alignment:
Q  354 attctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtga-tgtgcaagtcacaccaa 451  Q
    |||||||||||||||||||  | ||||||||||| || ||| ||||| ||||||||| ||||| |||||||  ||||||||| |||||||||| |  |||    
T  217757 attctttcttttctctagttcacgagagaaattggcagaacattattttgtaaactaccattgatcgatacacttggtgtgaatgtgcaagtctcttcaa 217856  T
Q  452 ggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagcgtgtcc 551  Q
    ||||| ||| ||||         |||||||||||||| |||||||| ||| | ||||| || ||||||| || ||||||| ||||||||| ||  |||||    
T  217857 ggatttcatcgtatt--------gattcgccggtata-cccttttgtatcaggttggcatagctggtgggggagaatcgatcctaaaggt-agtttgtcc 217946  T
Q  552 cacacacgctttggaatttatgtgcacttttcttcatgatcattttcatcatctt 606  Q
    |||||||  ||||||||||||||||||| ||| | ||| |||| |||||||||||    
T  217947 cacacac--tttggaatttatgtgcactattcattatgttcatcttcatcatctt 217999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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