View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12552_high_16 (Length: 276)
Name: NF12552_high_16
Description: NF12552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12552_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 12 - 260
Target Start/End: Original strand, 145305 - 145553
Alignment:
| Q |
12 |
gagatgaagatgtcaggaaaagtaggtctgaatatgtattcatgataggctcaggttcagtttcatggccatctaaaaaacaaccaatagttacgttgtc |
111 |
Q |
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| T |
145305 |
gagatgaagatgacaggaaaagcacatctggatatgtcttcatgatgggctcaggtgcaatttcatggtcatccaaaaaacaaccaatagttactttgtc |
145404 |
T |
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| Q |
112 |
cactactatagctgagtttattgcagctaaatcatgtgcttgctaagtcatttggttgagaaggttaattagagagcttggttatgatgaagaagagccc |
211 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||| ||| |||||||||||||||| |||||||||||||||| |||||||||||||| ||| |
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| T |
145405 |
tactactgaagctgagtttattgcagctacatcatgtgcttgccaagccatttggttgagaaggctaattagagagcttggatatgatgaagaagatccc |
145504 |
T |
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| Q |
212 |
acaccactgttttacgataatgtctctgcaattaagttgtcaaagaatt |
260 |
Q |
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| T |
145505 |
acaccagtattttgtgataatgtctctaccattaagctgtcaaaaaatt |
145553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 12 - 260
Target Start/End: Original strand, 153326 - 153574
Alignment:
| Q |
12 |
gagatgaagatgtcaggaaaagtaggtctgaatatgtattcatgataggctcaggttcagtttcatggccatctaaaaaacaaccaatagttacgttgtc |
111 |
Q |
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| T |
153326 |
gagatgaagatgacaggaaaagcacatctggatatgtcttcatgatgggctcaggtgcaatttcatggtcatccaaaaaacaaccaatagttactttgtc |
153425 |
T |
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| Q |
112 |
cactactatagctgagtttattgcagctaaatcatgtgcttgctaagtcatttggttgagaaggttaattagagagcttggttatgatgaagaagagccc |
211 |
Q |
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| T |
153426 |
tactactgaagctgagtttattgcagctacatcatgtgcttgccaagccatttggttgagaaggctaattagagagcttggatatgatgaagaagatccc |
153525 |
T |
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| Q |
212 |
acaccactgttttacgataatgtctctgcaattaagttgtcaaagaatt |
260 |
Q |
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| T |
153526 |
acaccagtattttgtgataatgtctctaccattaagctgtcaaaaaatt |
153574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 132 - 260
Target Start/End: Original strand, 28006222 - 28006347
Alignment:
| Q |
132 |
ttgcagctaaatcatgtgcttgctaagtcatttggttgagaaggttaattagagagcttggttatgatgaagaagagcccacaccactgttttacgataa |
231 |
Q |
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| T |
28006222 |
ttgcagctacatcatgtacttgctaagtcatttggttgagaaggttaattagagagcttggttatgat---aaagagcccacaccagtgttttgcgataa |
28006318 |
T |
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| Q |
232 |
tgtctctgcaattaagttgtcaaagaatt |
260 |
Q |
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| T |
28006319 |
tgcctctgcaattaagttgtcaaagaatt |
28006347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 28006130 - 28006220
Alignment:
| Q |
13 |
agatgaagatgtcaggaaaagtaggtctgaatatgtattcatgataggctcaggttcagtttcatggccatctaaaaaacaaccaatagtt |
103 |
Q |
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| T |
28006130 |
agatgaagatgttaggaaaagtacgtctgaatatgtcctcatgatgggctcaggtgcagtttcatggtcatccaaaaaacaatcaatagtt |
28006220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 30967359 - 30967303
Alignment:
| Q |
62 |
tcaggttcagtttcatggccatctaaaaaacaaccaatagttacgttgtccactact |
118 |
Q |
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| T |
30967359 |
tcagggtcagtgtcatggtcctcaaagaaacaaccaattgttacgttgtccactact |
30967303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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