View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12552_high_2 (Length: 556)
Name: NF12552_high_2
Description: NF12552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12552_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 43291119 - 43291531
Alignment:
| Q |
1 |
agatatatatggttactactcccaacacaggctggcttaagtgggatgaatgaattgaggcttcttggacggacgccaattatatttattttccatgttg |
100 |
Q |
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| T |
43291119 |
agatatatatggttactactcccaacacaggctggcttaagtgggatgaatgaattgaggcttcttggacggacgccaattatatttattttccatgttg |
43291218 |
T |
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| Q |
101 |
acatgacatgagcattcaaccggagactctagctagctaataatgcctcaacagaacataccctttccccctggacacattcaggaatatctcatatcct |
200 |
Q |
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| T |
43291219 |
acatgacatgagcattcaacatgagactctagctagctaataatgcctcaacagaacataccttttccccctggacacattcaggaatatctcatatcct |
43291318 |
T |
|
| Q |
201 |
atatcatcccaannnnnnnnnnnnggatcattttgatgcttccaattatatttgtttatttcttatgaataacatataaataggatcttctttttaaaac |
300 |
Q |
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| T |
43291319 |
atatcatcccaa-ttattttttttggatcattttgatgcttccaattatatttgtttatttcttatgaataacatataaatatgatcttctttttaaaac |
43291417 |
T |
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| Q |
301 |
actttagatatattaaaactcgaattagaacttgcaatattaatatctttgtattcagttcttgtaattttcacagctggattcttcaacattaaaaaac |
400 |
Q |
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| T |
43291418 |
actttagatatattaaaactcgaattagaacttgcaatattcatatctttgtattcagttcttgtaattttcacagctagattcttcaacattaaaaaac |
43291517 |
T |
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| Q |
401 |
tataaaactaggga |
414 |
Q |
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| T |
43291518 |
tataaaactaggga |
43291531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 415 - 538
Target Start/End: Original strand, 43291557 - 43291680
Alignment:
| Q |
415 |
tagaatactactactcttgtcccatgttctctctgtttattttcattcacaatcaacattactaaattcacctctttaccttatgtttctttccggtttc |
514 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43291557 |
tagaatacgactactcttgtcccatgttctctctgtttattttcattcacaatcaacattactaaattgacctctttaccttatgtttctttccggtttc |
43291656 |
T |
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| Q |
515 |
tatttttatcacatgagattgatt |
538 |
Q |
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| T |
43291657 |
tatttttatcacatgagattgatt |
43291680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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