View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12552_high_25 (Length: 230)
Name: NF12552_high_25
Description: NF12552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12552_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 33026863 - 33027064
Alignment:
| Q |
13 |
agcacagacaatcttgacagaaatagaatagnnnnnnnctaacttctgaccttgttaatatcccaactagagtgaggaagggatctcagggaagacttga |
112 |
Q |
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| T |
33026863 |
agcacagacaatcttgacagaaatagaatagaaaaaaactaacttctgaccttgttaatatcccaactagagtgaggaagggatctcagggaagacttga |
33026962 |
T |
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| Q |
113 |
tttatttttgtgttgctgaacgaataacttgctttaaccataattccatgtgagtggcacaaatacaaacataataatttcaactgctttctcctaacat |
212 |
Q |
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| T |
33026963 |
tttgtttttgtgttgctgaacgaataacttgctttaaccataattccatgtgagtggcacaaatacaaacataataatttcaaccgctttctcctaacat |
33027062 |
T |
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| Q |
213 |
tt |
214 |
Q |
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|| |
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| T |
33027063 |
tt |
33027064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 63 - 214
Target Start/End: Original strand, 33031257 - 33031408
Alignment:
| Q |
63 |
cttgttaatatcccaactagagtgaggaagggatctcagggaagacttgatttatttttgtgttgctgaacgaataacttgctttaaccataattccatg |
162 |
Q |
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|||||| || |||||||||||||||||||||||||||| |||||||| ||||| ||||| || | ||||| ||||||||||||||||||||||||||||| |
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| T |
33031257 |
cttgtttatttcccaactagagtgaggaagggatctcaaggaagactagatttgtttttatgattctgaatgaataacttgctttaaccataattccatg |
33031356 |
T |
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| Q |
163 |
tgagtggcacaaatacaaacataataatttcaactgctttctcctaacattt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33031357 |
tgagtggcacaaatacaaacataataatttcaactgctttctcctaacattt |
33031408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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