View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12552_high_3 (Length: 496)
Name: NF12552_high_3
Description: NF12552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12552_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 19921889 - 19922085
Alignment:
| Q |
14 |
gaagaaactgggcgaaatggatgaacttgaaatggttccagtaaatgtctacttcccaagatctgttgctatcttccatttgaaacagaagcatagagtg |
113 |
Q |
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| T |
19921889 |
gaagaaactgggcgaaatg-atgaactggaaatggttcgggtaaatgtcttcttcccaagatctgttgctatctaacatttgaaacataagcagagagtg |
19921987 |
T |
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| Q |
114 |
aaatggttcaaagttgcaaagtacaatgacagggtctagagttcaagaagagaggtaaagtagagtataggctctagtaaagaaaagtaccggtcata |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
19921988 |
aaatggttcaaagttgcaaagtacaatgacagggtctagagttcaagaagagaggtaaagtagagtataggctctagtcaagaaaagtacaggtcata |
19922085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 32 - 203
Target Start/End: Complemental strand, 19922938 - 19922767
Alignment:
| Q |
32 |
ggatgaacttgaaatggttccagtaaatgtctacttcccaagatctgttgctatcttccatttgaaacagaagcatagagtgaaatggttcaaagttgca |
131 |
Q |
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| T |
19922938 |
ggatgaactggaaatggttcgggtaaatgtcttcttcccaagatctgttgctatcttccatttgaaacagaagcagagagtgaaatggttcaaagttgca |
19922839 |
T |
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| Q |
132 |
aagtacaatgacagggtctagagttcaagaagagaggtaaagtagagtataggctctagtaaagaaaagtac |
203 |
Q |
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| T |
19922838 |
aagtacaatgacagggtctagagttcaagaagagaggtaaagtagagtataggctctagtcaagaaaagtac |
19922767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 6390149 - 6389971
Alignment:
| Q |
16 |
agaaactgggcgaaatggatgaacttgaaatggttccagtaaatgtctacttcccaagatctgttgctatcttccatttgaaacagaagcatagagtgaa |
115 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||| | ||||| |||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
6390149 |
agaaactgagcgaaatggatgaactggaaatggttccagtaaatgttttcttccaaagatctgctgctatcttccatttgaaacagaagcagagagtgaa |
6390050 |
T |
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| Q |
116 |
atggttcaaagttgcaaagtacaa----tgacagggtctagagttcaagaagagaggtaaagtagagtataggctctagta |
192 |
Q |
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| T |
6390049 |
atggttcaaaggtgcaaagtacagagagtgacagggtctag--ttcaagaagagacgtaaagtacagcataggctctagta |
6389971 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 6397257 - 6397193
Alignment:
| Q |
14 |
gaagaaactgggcgaaatggatgaacttgaaatggttccagtaaatgtctacttcccaagatctg |
78 |
Q |
| |
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||||||| |||| |||||||||||||| ||||||| |||||||||| ||| |||||||||||||| |
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| T |
6397257 |
gaagaaattgggtgaaatggatgaactggaaatgggtccagtaaatatcttcttcccaagatctg |
6397193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 14 - 132
Target Start/End: Complemental strand, 6419747 - 6419625
Alignment:
| Q |
14 |
gaagaaactgggcgaaatggatgaacttgaaatggttccagtaaatgtctacttcccaagatctgttgctat---cttccatttgaaacagaagcataga |
110 |
Q |
| |
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||||||| |||| |||||| ||||||| |||| |||||||||||| ||| ||||||| |||||| | | || ||||||||| ||| ||||||| ||| |
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| T |
6419747 |
gaagaaattgggtgaaatgaatgaactgaaaattgttccagtaaatatcttcttcccaggatctgcttccatctacttccattttaaagagaagcagaga |
6419648 |
T |
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| Q |
111 |
gt-gaaatggttcaaagttgcaa |
132 |
Q |
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|| |||||||||||||||||||| |
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| T |
6419647 |
gtggaaatggttcaaagttgcaa |
6419625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 6403391 - 6403282
Alignment:
| Q |
27 |
gaaatggatgaacttgaaatggttccagtaaatgtctacttcccaagatctgttgcta---tcttccatttgaaacagaagcatagagt-gaaatggttc |
122 |
Q |
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|||||||||||| | ||||||||||||||||| ||| | ||||||||||| | | | ||||||||||||||||||||| ||||| |||||||||| |
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| T |
6403391 |
gaaatggatgaattgaaaatggttccagtaaatatcttcctcccaagatctacttccatcttcttccatttgaaacagaagcggagagtggaaatggttc |
6403292 |
T |
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| Q |
123 |
aaagttgcaa |
132 |
Q |
| |
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|||||||||| |
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| T |
6403291 |
aaagttgcaa |
6403282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 6414332 - 6414263
Alignment:
| Q |
14 |
gaagaaactgggcgaaatggatgaacttgaaatggttccagtaaatgtctacttcccaagatctgttgct |
83 |
Q |
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||||||| ||| |||||||||||||| ||||||||||||||||| ||| | ||||||||| ||||||| |
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| T |
6414332 |
gaagaaatagggtgaaatggatgaactgaaaatggttccagtaaatctcttcctcccaagatttgttgct |
6414263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 6377807 - 6377737
Alignment:
| Q |
14 |
gaagaaactgggcgaaatggatgaacttgaaatggttccagtaaatgtctacttcccaagatctgttgcta |
84 |
Q |
| |
|
||||||| |||| |||| ||||||| | ||||||| |||||||||||||| | |||||||| ||| ||||| |
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| T |
6377807 |
gaagaaattgggtgaaacggatgaattggaaatgggtccagtaaatgtcttcctcccaagacctgctgcta |
6377737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 6379562 - 6379513
Alignment:
| Q |
14 |
gaagaaactgggcgaaatggatgaacttgaaatggttccagtaaatgtct |
63 |
Q |
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||||||| |||| |||||||||||| | ||||||| |||||||||||||| |
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| T |
6379562 |
gaagaaattgggtgaaatggatgaattggaaatgggtccagtaaatgtct |
6379513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 381
Target Start/End: Original strand, 39430191 - 39430229
Alignment:
| Q |
343 |
agcttaacaaaatctaaaattaggtaaaccttgtctatt |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
39430191 |
agcttaacaaaatctaaaattaggtaaaccttgtctatt |
39430229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 227 - 277
Target Start/End: Original strand, 39430075 - 39430125
Alignment:
| Q |
227 |
aacaaaggaagttgtaagagaac-ttacaaccccatgtatatatcagaagtt |
277 |
Q |
| |
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||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
39430075 |
aacaaaggaagttgtaagagaactttacaa-cccatgtatatatcagaagtt |
39430125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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